/*
* EuroCarbDB, a framework for carbohydrate bioinformatics
*
* Copyright (c) 2006-2009, Eurocarb project, or third-party contributors as
* indicated by the @author tags or express copyright attribution
* statements applied by the authors.
*
* This copyrighted material is made available to anyone wishing to use, modify,
* copy, or redistribute it subject to the terms and conditions of the GNU
* Lesser General Public License, as published by the Free Software Foundation.
* A copy of this license accompanies this distribution in the file LICENSE.txt.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
* or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
* for more details.
*
* Last commit: $Rev: 1210 $ by $Author: glycoslave $ on $Date:: 2009-06-12 #$
*/
/**
@author Alessio Ceroni (a.ceroni@imperial.ac.uk)
*/
package org.eurocarbdb.application.glycoworkbench.plugin;
import org.eurocarbdb.application.glycoworkbench.*;
import org.eurocarbdb.application.glycanbuilder.*;
import java.util.*;
public class CollectionStructureGenerator implements StructureGenerator {
private Collection<Glycan> structures = null;
private Iterator<Glycan> structure_iter = null;
public CollectionStructureGenerator() {
structures = new Vector<Glycan>();
}
public CollectionStructureGenerator(Collection<Glycan> c) {
if( c!=null )
structures = c;
else
structures = new Vector<Glycan>();
}
public void start(MassOptions _mass_opt) {
structure_iter = structures.iterator();
}
public FragmentEntry next(boolean backtrack) {
if( structure_iter.hasNext() )
return new FragmentEntry(structure_iter.next(),"");
return null;
}
public double computeScore(Glycan structure) {
return 0.;
}
}