Home
Java
JSTL
Struts
Spring
Hibernate
Webservice
Eclipse
API
Guest Post
Menu
Explorer
eurocarbdb-master
application
Eurocarbdb
src
java
org
eurocarbdb
action
AbstractBrowseAction.java
AbstractExperimentAwareAction.java
AbstractSearchAction.java
AbstractSessionAwareAction.java
AbstractShowDetailAction.java
AbstractUserAwareAction.java
AskConfirmation.java
BrowseAction.java
DeveloperAction.java
EditingAction.java
EurocarbAction.java
ExperimentAware.java
NoopAction.java
PageableAction.java
ParameterChecking.java
RequiresAdminLogin.java
RequiresLogin.java
Result.java
TrancheUploadTest.java
UserAware.java
admin
AbstractDownloadAction.java
CreateDatabase.java
DownloadMesh.java
DownloadNCBI.java
ImportGlycomeDB.java
LoadTaxonomy.java
SendBugReport.java
TestException.java
UpdateTaxonomy.java
core
Autocompleter.java
BrowseContributorContexts.java
BrowseContributorEvidence.java
BrowseContributorStructures.java
BrowseEvidence.java
BrowseExperiments.java
BrowseStructures.java
ContributeStructure.java
CreateBiologicalContext.java
CreateContributor.java
CreateEvidence.java
CreateExperiment.java
CreateExperimentStep.java
CreateJournal.java
CreateReferences.java
CreateTechnique.java
EditGlycanSequence.java
EntityManaged.java
EurocarbStatistics.java
GetSugarImage.java
Link.java
SearchDisease.java
SearchGlycanSequence.java
SearchPerturbation.java
SearchSubstructure.java
SearchTaxonomy.java
SearchTissueTaxonomy.java
SelectStructure.java
ShowBiologicalContext.java
ShowContributor.java
ShowDisease.java
ShowEvidence.java
ShowExperiment.java
ShowExperimentStep.java
ShowGlycan.java
ShowGlycanSequenceReference.java
ShowPerturbation.java
ShowReference.java
ShowTaxonomy.java
ShowTissueTaxonomy.java
UserBiasedAutocompleter.java
UserSummary.java
devel
TestGlycanSequenceParsing.java
examples
ExampleWizard.java
exception
EurocarbActionException.java
InsufficientParams.java
InsufficientPermissions.java
hplc
BeginHplc.java
Column.java
CreateColumn.java
CreateContent.java
CreateDetector.java
CreateDiseaseContent.java
CreateGu.java
CreateHplcBiologicalContext.java
CreateHplcGu.java
CreateInstrument.java
CreateMethod.java
CreateParent.java
CreateTissueContent.java
DetectorHplc.java
EntityManaged.java
Example.java
InitDevices.java
ProfileAnnotated.java
ReferenceUpload.java
SelectColumn.java
SelectDetector.java
SelectInstrument.java
SelectSettings.java
ShowColumn.java
ShowDetector.java
ShowDigest.java
ShowDigestAssign.java
ShowGlycan.java
ShowGlycobase.java
ShowHplc.java
ShowPrelimAssign.java
ShowSummary.java
ShowSummaryDigests.java
UploadAction.java
UserCreateColumn.java
UserCreateDetector.java
contractStructuresCT.java
coreIntegration.java
digest.java
digestAssign.java
digestUpload.java
meeting.java
ogbiTranslator.java
preAssign.java
refUpload.java
refine.java
refinetest.java
searchGlycobase.java
showGlycobaseRefine.java
showPrelimRefine.java
showTax.java
update.java
mapper
UrlActionMapper.java
ms
AbstractMsAction.java
AnnotationUtils.java
BrowseAcquisitions.java
BrowseScans.java
CreateAcquisition.java
CreateAnalyser.java
CreateAnnotations.java
CreateDevice.java
CreateForm.java
CreatePeakList.java
CreateScan.java
CreateScanImage.java
EditAcquisition.java
EditAnnotations.java
EditScan.java
GWUploadFile.java
GenerateGwbFile.java
GetFile.java
GetScanImage.java
InitDevices.java
InitIons.java
ShowAcquisition.java
ShowOwnedOthersAcquisitions.java
ShowScan.java
ShowScanAnnotations.java
ShowScanImage.java
SimpleScan.java
StartWorkflow.java
TestSelect.java
TestShowSession.java
UploadAnnotations.java
nmr
Casper.java
Casper_curate.java
Casper_determine.java
Casper_simulate.java
PictureStream.java
user
ChangePassword.java
OpenIdAuthenticator.java
RandomPassword.java
ResetPassword.java
SendCustomMail.java
UserDetails.java
UserManager.java
UserManipulation.java
UserRegistration.java
dataaccess
AuthenticationInterceptor.java
DateConverter.java
InsertionQueue.java
SavedGlycanSequenceSearch.java
core
ComparatorExternalReference.java
gui
Navigation.java
interceptor
AuthorisationInterceptor.java
DefaultCookieInterceptor.java
PersistenceLifecycleInterceptor.java
SessionAttachmentInterceptor.java
XmlSerialiserInterceptor.java
result
XmlSerialiserResult.java
servlet
filter
HibernateSessionRequestFilter.java
init
EurocarbApplicationContextHandler.java
tranche
TrancheAdmin.java
TrancheUtility.java
test
eurocarbdb
action
BaseActionTestSuite.java
core
TestAutoCompletor.java
TestCreateReferences.java
TestShowTissueTaxonomy.java
ms
TestCreateScan.java
TestEditScan.java
TestStartMSWorkflow.java
tranche
UploadDownloadTestSuite.java
GlycanBuilder
src
org
eurocarbdb
application
glycanbuilder
ActionManager.java
Atom.java
BBoxManager.java
BaseDocument.java
BaseWorkspace.java
Bond.java
BookingManager.java
BuilderWorkspace.java
ClipUtils.java
CombinationGenerator.java
CompositionDialog.java
CompositionOptions.java
Configuration.java
Context.java
ContextAwareContainer.java
ConvertGWS.java
CoreDictionary.java
CoreType.java
CrossRingFragmentDictionary.java
CrossRingFragmentType.java
CustomFocusTraversalPolicy.java
Data.java
DropDownList.java
EscapeDialog.java
EurocarbResizableIcon.java
ExtensionFileFilter.java
FileConstants.java
FileHistory.java
FileUtils.java
FragmentCollection.java
FragmentDocument.java
FragmentEntry.java
FragmentGroup.java
FragmentOptions.java
FragmentSource.java
Fragmenter.java
GWSParser.java
Geometry.java
Glycan.java
GlycanAction.java
GlycanBuilder.java
GlycanBuilderApplet.java
GlycanCanvas.java
GlycanDocument.java
GlycanFormat.java
GlycanParser.java
GlycanParserFactory.java
GlycanRenderer.java
GlycanSelection.java
GlycanUndoManager.java
GlycanUndoRedoEvent.java
GlycanUndoRedoListener.java
GlycoCTCondensedParser.java
GlycoCTParser.java
GlycoMindsParser.java
GraphicOptions.java
GraphicOptionsDialog.java
GraphicUtils.java
GroupingSVGGraphics2D.java
HasActionProperty.java
ICON_PATH.java
ICON_SIZE.java
IMAGE_FORMAT.java
IconProperties.java
ImportStructureDialog.java
IntPair.java
IonCloud.java
Isotope.java
JCommandButtonAction.java
JCommandMenuButtonAction.java
JCommandToggleButtonAction.java
Linkage.java
LinkageMatcher.java
LinkageRenderer.java
LinkageStyle.java
LinkageStyleDictionary.java
LinucsParser.java
LogUtils.java
MassOptions.java
MassOptionsStructureDialog.java
MassUtils.java
MolecularFrameworkParser.java
Molecule.java
Monitor.java
MouseUtils.java
NotationChangeListener.java
Pair.java
PermutationGenerator.java
PositionManager.java
RepetitionPropertiesDialog.java
ReportDialog.java
ResAngle.java
Residue.java
ResidueDictionary.java
ResidueHistory.java
ResiduePlacement.java
ResiduePlacementDictionary.java
ResiduePropertiesDialog.java
ResidueRenderer.java
ResidueSelector.java
ResidueSelectorDialog.java
ResidueStyle.java
ResidueStyleDictionary.java
ResidueType.java
SAXUtils.java
STOCK_ICON.java
SVGGlycanRenderer.java
SVGUtils.java
StyledTextCellRenderer.java
TerminalDictionary.java
TerminalType.java
TextUtils.java
ThemeManager.java
TypePattern.java
Union.java
XMLUtils.java
GlycoPeakfinder
src
java
org
eurocarbdb
applications
ms
glycopeakfinder
action
CalculationAction.java
ContactAction.java
DataCollectorAction.java
DownloadAction.java
ExampleLoadAction.java
GetSugarCodeAction.java
GlycoPeakfinderAction.java
GlycosciencesStructureAction.java
IntroductionAction.java
LoadResultAction.java
LoadSettingsAction.java
ResetAction.java
ResultAction.java
SaveResultAction.java
SaveSettingsAction.java
calculation
GlycoPeakfinder.java
ParameterException.java
ParameterParsingException.java
io
CalcParameterXml.java
XLSExporter.java
storage
AnnotationEntity.java
CalculationDerivatisation.java
CalculationFragment.java
CalculationIon.java
CalculationMolecule.java
CalculationParameter.java
CalculationPeak.java
PeakAnnotation.java
Persubstitution.java
ResidueSpecial.java
Scan.java
SpectraType.java
util
AnnotationToString.java
ComparatorCalculationPeak.java
ComparatorMolecule.java
DefaultMasses.java
MassValueStorage.java
xmlfiles
DBInterface.java
ExporterXML.java
GeneratorDefault.java
GeneratorFragment.java
glycosciences
DatabaseResult.java
GlycoSciencesEntry.java
interceptor
HashParameterInterceptor.java
PageFromParameterInterceptor.java
io
PeakListLoader.java
PeakListLoaderExeption.java
PeakListLoaderFlexAnalysis.java
PeakListLoaderTXT.java
storage
Compound.java
ContactInformation.java
ErrorInformation.java
GPAnnotation.java
GPMolecule.java
GPOtherResidue.java
GPPeak.java
GPPeakAnnotated.java
GPResidue.java
GPResult.java
GlycoPeakfinderSettings.java
LimitValues.java
MassMolecule.java
MassResidue.java
ResidueCategory.java
util
ComparatorAnnotation.java
ComparatorPeak.java
Configuration.java
DBInterface.java
DBInterfaceMasses.java
ErrorTextEnglish.java
GlycoPeakfinderException.java
SMTPAuthenticator.java
GlycoWorkbench
dialogs
src
AnnotationOptionsDialog.java
AnnotationReportChoiceDialog.java
AnnotationReportOptionsDialog.java
CreateCompositionDialog.java
FragmentOptionsDialog.java
GAGDialog.java
GraphicOptionsDialog.java
ImportStructureDialog.java
MassOptionsDialog.java
PeakFinderOptionsDialog.java
PeakPickerOptionsDialog.java
ProfilerOptionsDialog.java
ProfilesComparisonReportDialog.java
RepetitionPropertiesDialog.java
ResiduePropertiesDialog.java
ScanDataPropertiesDialog.java
ScanPropertiesDialog.java
SearchDialog.java
StoreStructuresDialog.java
UserDictionariesManagerDialog.java
src
org
eurocarbdb
application
glycoworkbench
AnnotatedPeakList.java
Annotation.java
AnnotationOptions.java
AnnotationOptionsDialog.java
AnnotationSelection.java
Base64.java
FragmentOptionsDialog.java
GlycanWorkspace.java
GlycoWorkbench.java
GwbWindowListener.java
IonCloudUtils.java
MMFCreator.java
MassUnit.java
NotesDocument.java
Peak.java
PeakAnnotation.java
PeakAnnotationCollection.java
PeakAnnotationMultiple.java
PeakData.java
PeakList.java
RibbonManager.java
Scan.java
ScanData.java
SpectraDocument.java
WebBrowser.java
plugin
AbstractPlugin.java
AnnotationPlugin.java
AnnotationReportApplet.java
AnnotationThread.java
CollectionStructureGenerator.java
DictionariesEditPanel.java
DictionariesManagerPanel.java
DictionariesSearchPanel.java
DictionarySelection.java
DictionaryStructureGenerator.java
DocumentPanel.java
FragmentCanvas.java
FragmentDetailsPanel.java
FragmentEditorPanel.java
FragmentSummaryPanel.java
FragmentsPlugin.java
GAGDictionary.java
GAGOptions.java
GAGOptionsDialog.java
GAGPlugin.java
GAGType.java
Generator.java
GeneratorListener.java
GlycanTable.java
MSUtils.java
MultiLineCellRenderer.java
MultiLineHeaderRenderer.java
NotesPanel.java
NotesPlugin.java
PeakAnnotationCalibrationPanel.java
PeakAnnotationDetailsPanel.java
PeakAnnotationReportPanel.java
PeakAnnotationStatsPanel.java
PeakAnnotationSummaryPanel.java
PeakFinderOptions.java
PeakFinderOptionsDialog.java
PeakFinderPlugin.java
PeakFinderThread.java
PeakListChartPanel.java
PeakListPanel.java
PeakListPlugin.java
Plugin.java
PluginManager.java
ProfilerOptions.java
ProfilerOptionsDialog.java
ProfilerPlugin.java
ProfilerThread.java
ProgressDialog.java
ReportingPlugin.java
ResizingTable.java
ScanAnnotationCascadeThread.java
ScanDataPropertiesDialog.java
ScanPropertiesDialog.java
SearchDetailsPanel.java
SearchDialog.java
SearchPlugin.java
SearchSummaryPanel.java
SortingTablePanel.java
SpectraPanel.java
SpectraPlugin.java
StoreStructuresDialog.java
StructureDictionary.java
StructureGenerator.java
StructureScorer.java
StructureType.java
TablePanel.java
TableSorter.java
WorkspacePanel.java
WorkspacePlugin.java
grammar
Constraint.java
Grammar.java
GrammarOptions.java
GrammarTree.java
Rule.java
RuleProfile.java
peakpicker
ContinuousWaveletTransform.java
ContinuousWaveletTransformNumIntegration.java
DefaultParamHandler.java
GaussFilter.java
MathH.java
OptimizePeakDeconvolution.java
Param.java
PeakPicker.java
PeakPickerCWT.java
PeakPickerOptionsDialog.java
PeakShape.java
SignalToNoiseEstimator.java
SignalToNoiseEstimatorMedian.java
SmoothFilter.java
TopHatFilter.java
reporting
AnnotationObject.java
AnnotationReportCanvas.java
AnnotationReportChoiceDialog.java
AnnotationReportDocument.java
AnnotationReportEditor.java
AnnotationReportOptions.java
AnnotationReportOptionsDialog.java
ProfilesComparisonReportChartCanvas.java
ProfilesComparisonReportChartFrame.java
ProfilesComparisonReportDialog.java
ProfilesComparisonReportDocument.java
ProfilesComparisonReportOptions.java
ProfilesComparisonReportTableFrame.java
StructureSelectorDialog.java
s3
Cockpit.java
CockpitPreferences.java
S3Plugin.java
gui
AWSCredentialsDialog.java
AWSDevPayProductPanel.java
AccessControlDialog.java
BucketLoggingDialog.java
BucketTableModel.java
CreateBucketDialog.java
LoginCredentialsPanel.java
LoginLocalFolderPanel.java
LoginPassphrasePanel.java
ObjectTableModel.java
PreferencesDialog.java
RequesterPaysDialog.java
SignedGetUrlDialog.java
StartupDialog.java
test
ws
EchoService.java
Pair.java
GlycomeDBUpdate
src
org
eurocarbdb
util
glycomedb
Configuration.java
CrossReference.java
CrossReferenceToStructure.java
GlycomeDBUpdate.java
GlycomeDBUpdateUtil.java
UpdatingEuroCarbDataBase.java
data
DataExport.java
DatabaseListType.java
ErrorType.java
StructureListType.java
TaxonTreeType.java
MolecularFramework
src
org
eurocarbdb
MolecularFramework
examples
CarbbankToLinucs.java
io
CarbohydrateSequenceEncoding.java
ErrorTextEng.java
GlycoCT
BasetypeFactory.java
GlycoCTGlycoEdgeComparator.java
GlycoCTGlycoNodeComparator.java
GlycoCTGraphAlternativeComparator.java
GlycoCTLinkageComparator.java
GlycoCTTraverser.java
GlycoCTUnderdeterminedSubtreeComparator.java
LevelGZIPOutputStream.java
SugarExporterGlycoCT.java
SugarExporterGlycoCTCondensed.java
SugarImporterGlycoCT.java
SugarImporterGlycoCTCondensed.java
Glyde
Atomnames.java
GlydeLinkage.java
SugarExporterGlydeII.java
SugarImporterGlydeII.java
Linucs
GlycoTraverserLinucs.java
GlycoVisitorCyclic.java
GlycoVisitorExport.java
GlycoVisitorExportRepeat.java
LinucsComparatorEdges.java
SugarExporterLinucs.java
SugarImporterLinucs.java
MonosaccharideBuilder.java
OGBI
OgbiResidue.java
SugarImporterOgbi.java
StructureSpecialInformation.java
SugarExporter.java
SugarExporterException.java
SugarExporterFactory.java
SugarImporter.java
SugarImporterException.java
SugarImporterFactory.java
SugarImporterText.java
bcsdb
BcsdbSubTree.java
SugarImporterBCSDB.java
carbbank
SugarImporterCarbbank.java
cfg
CFGSubTree.java
CFGUnderdeterminedTree.java
SugarImporterCFG.java
glycobase
GlycobaseResidue.java
GlycobaseResidueComparator.java
SugarImporterGlycobase.java
iupac
IupacSubTree.java
SugarImporterIupacCondenced.java
SugarImporterIupacShortV1.java
SugarImporterIupacShortV2.java
kcf
KCFBlock.java
KCFLinkage.java
KCFResidue.java
SugarImporterKCF.java
namespace
AlternativeMapping.java
GlycoVisitorFromGlycoCT.java
GlycoVisitorFromGlycoCTIsolated.java
GlycoVisitorFuseSubstituent.java
GlycoVisitorLinkageTypeNormalisation.java
GlycoVisitorSubstituentUnknownPosition.java
GlycoVisitorToGlycoCT.java
GlycoVisitorToGlycoCTextendMSDB.java
sugar
Anomer.java
BaseType.java
Edge.java
GlycoEdge.java
GlycoGraph.java
GlycoGraphAlternative.java
GlycoNode.java
GlycoconjugateException.java
Linkage.java
LinkageType.java
Modification.java
ModificationType.java
Monosaccharide.java
NonMonosaccharide.java
NonMonosaccharides
HistoricalEntity.java
Substituent.java
SubstituentType.java
Sugar.java
SugarUnitAlternative.java
SugarUnitCyclic.java
SugarUnitRepeat.java
Superclass.java
UnderdeterminedSubTree.java
UnvalidatedGlycoNode.java
util
analytical
mass
GlycoMassException.java
GlycoVisitorMass.java
GlycoVisitorRepeatLinkType.java
MassComponents.java
misc
ComparatorModification.java
GlycoVisitorCountNodeType.java
monosaccharideScalableName
MonosaccharideScalableName.java
similiarity
MCSFuzzy
ExampleUsage.java
MCSEdgeComparatorFuzzy.java
MCSFuzzy.java
MCSNodeComparatorFuzzy.java
MCSVisitorFuzzy.java
MaximumCommonSubgraph
ExampleUsage.java
MCSEdgeComparatorExact.java
MCSExactMatch.java
MCSNodeComparatorExact.java
MCSVisitor.java
PairSimiliarity
ExampleUsage.java
PairData.java
PairSimiliarity.java
ReducingEndSubgraphMatch
ExampleUsage.java
RESMEdgeComparatorFuzzy.java
RESMFuzzy.java
RESMNodeComparatorFuzzy.java
RESMVisitorFuzzy.java
SubgraphMatch
ESMEdgeComparatorFuzzy.java
ESMFuzzy.java
ESMNodeComparatorFuzzy.java
ESMVisitorFuzzy.java
ExampleUsage.java
traverser
GlycoTraverser.java
GlycoTraverserEdges.java
GlycoTraverserNodes.java
GlycoTraverserSimple.java
GlycoTraverserTree.java
GlycoTraverserTreePreOrder.java
GlycoTraverserTreeSingle.java
GlycoTraverserValdidation.java
validation
GlycoVisitorContainsNode.java
GlycoVisitorContainsNodeBelow.java
GlycoVisitorSugarGraph.java
GlycoVisitorValidation.java
SugarGraphAglycon.java
SugarGraphInformation.java
visitor
GlycoVisitor.java
GlycoVisitorCountBranchingPoints.java
GlycoVisitorCountLongestBranch.java
GlycoVisitorCountNodeType.java
GlycoVisitorCountResidue.java
GlycoVisitorCountResidueTerminal.java
GlycoVisitorException.java
GlycoVisitorNodeType.java
GlycoVisitorReplaceName.java
Visitable.java
ResourcesDB
src
org
eurocarbdb
resourcesdb
Config.java
GlycanNamescheme.java
MolecularEntity.java
ResourcesDbException.java
ResourcesDbObject.java
atom
Atom.java
AtomConnection.java
AtomTemplate.java
Composition.java
Isotope.java
Mol2Type.java
Periodic.java
fragment
PersubstitutionType.java
glycoconjugate_derived
ComparatorModification.java
EcdbAnomer.java
EcdbBaseType.java
EcdbModification.java
EcdbModificationType.java
EcdbMonosaccharide.java
EcdbResidueParser.java
EcdbSuperclass.java
GlycoconjugateException.java
LinkageType.java
io
BcsdbExporter.java
BcsdbImporter.java
CarbbankExporter.java
CarbbankImporter.java
CfgExporter.java
CfgImporter.java
GlycoCTExporter.java
GlycoCTImporter.java
HibernateAccess.java
HibernateGenericEnumUserType.java
Mol2Exporter.java
MonosaccharideConversion.java
MonosaccharideConverter.java
MonosaccharideExchangeObject.java
MonosaccharideExporter.java
MonosaccharideImporter.java
MsdbSeedImporter.java
NameParsingException.java
StandardExporter.java
StandardImporter.java
SubstituentExchangeObject.java
monosaccharide
Anomer.java
Basetype.java
BasetypeBuilderGroup.java
BasetypeConversion.java
CoreModification.java
CoreModificationTemplate.java
Modification.java
Monosaccharide.java
MonosaccharideDataBuilder.java
MonosaccharideException.java
MonosaccharideLinkingPosition.java
MonosaccharideSynonym.java
MonosaccharideValidation.java
Ringtype.java
StereoConfiguration.java
Stereocode.java
SubstituentAlias.java
SubstituentSubpartTreeNode.java
Substitution.java
nonmonosaccharide
AglyconAlias.java
AglyconTemplate.java
AminoAcid.java
NonBasetypeLinkingPosition.java
NonmonosaccharideException.java
representation
Fischer.java
Haworth.java
ResidueRepresentation.java
ResidueRepresentationFormat.java
ResidueRepresentationType.java
SvgFactory.java
template
AglyconTemplateContainer.java
BasetypeTemplate.java
BasetypeTemplateContainer.java
MonosaccharideDictionary.java
MonosaccharideDictionaryEntry.java
NonBasetypeTemplate.java
SubstituentTemplate.java
SubstituentTemplateContainer.java
TemplateContainer.java
TrivialnameTemplate.java
TrivialnameTemplateContainer.java
util
FileUtils.java
HibernateUtil.java
NumberPrefix.java
NumberUtils.java
StringUtils.java
Utils.java
web
WEB-INF
src
org
eurocarbdb
resourcesdb
action
BuilderByGroupAction.java
EMenu.java
GetMsRepresentationAction.java
IMenuItem.java
MsdbDefaultAction.java
NotationAction.java
QueryElementsAction.java
QueryMonosaccharideByNameAction.java
QueryMonosaccharideByPropertiesAction.java
QueryStartAction.java
ShowElementAction.java
ShowMonosaccharideAction.java
ShowMonosaccharideHelpAction.java
ShowSubstituentAction.java
admin
MsdbAdminAction.java
UploadRepresentationAction.java
core-api
src
org
eurocarbdb
dataaccess
BasicEurocarbObject.java
Contributed.java
EntityDoesntExistException.java
EntityManager.java
Eurocarb.java
EurocarbObject.java
HibernateEntityManager.java
HibernateXMLEntityManager.java
core
Author.java
BiologicalContext.java
BiologicalContextAssociation.java
BiologicalContextContributor.java
BiologicalContextToGlycoconjugate.java
Composition.java
CompositionId.java
Contributor.java
Disease.java
DiseaseContext.java
DiseaseRelations.java
DiseaseSynonym.java
Evidence.java
EvidenceContext.java
Experiment.java
ExperimentContext.java
ExperimentStep.java
ExternalDatabaseReference.java
GlycanSequence.java
GlycanSequenceContext.java
GlycanSequenceEvidence.java
GlycanSequenceReference.java
GlycanSequenceRelations.java
Glycoconjugate.java
Glycoprotein.java
Journal.java
JournalReference.java
Perturbation.java
PerturbationContext.java
PerturbationRelations.java
Reference.java
ReferencedEvidence.java
Taxonomy.java
TaxonomyProteomeSkRanked.java
TaxonomyRelations.java
TaxonomySubtype.java
TaxonomySynonym.java
Technique.java
TissueTaxonomy.java
TissueTaxonomyRelations.java
TissueTaxonomySynonym.java
ref
BcsdbReference.java
CarbbankReference.java
CfgReference.java
GenericReference.java
GlyaffinityReference.java
GlycobaseDublinReference.java
GlycobaseLilleReference.java
GlycosciencesDeReference.java
KeggReference.java
seq
GlycanMonosaccharide.java
GlycanResidue.java
GlycanSubstituent.java
SubstructureQuery.java
SubstructureQueryCriterion.java
SubstructureQueryGenerator.java
SubstructureQueryGeneratorImpl1.java
SubstructureQueryGeneratorImpl2.java
SubstructureQueryResult.java
exception
DataAccessException.java
DataException.java
EurocarbException.java
InvalidAssociationException.java
InvalidPropertyException.java
UnauthorisedAccessException.java
hibernate
GenericEnumUserType.java
HibernateUtils.java
SugarSequenceUserType.java
hplc
Autogu.java
Column.java
Content.java
ContributorIndustry.java
Detector.java
Digest.java
DigestProfile.java
DigestSingle.java
DisRefine.java
Disappeared.java
Enzyme.java
Glycan.java
GlycanDisease.java
GlycanPerturbation.java
GlycanSequenceTemp.java
GlycanSourceLink.java
GlycanTaxonomy.java
GlycanTissue.java
HplcPeaksAnnotated.java
HplcPeaksIntegrated.java
Instrument.java
IntegrationMethod.java
Mandetector.java
MethodRun.java
Multipleglycoct.java
MultistructuresGlycoct.java
ParentProfile.java
PictorialRepresentation.java
Profile.java
ProfileData.java
Ref.java
RefLink.java
RefLinkId.java
RefTaxLink.java
StructuresGlycoct.java
indexes
Index.java
IndexByContributedDate.java
IndexByContributorName.java
IndexByMostEvidence.java
IndexByResidueCount.java
Indexable.java
ms
Acquisition.java
AcquisitionToPersubstitution.java
Analyser.java
AnalyserParameter.java
Annotation.java
DataProcessing.java
Device.java
DeviceSettings.java
EsiParameter.java
Fragmentation.java
FragmentationParameter.java
FragmentationType.java
Ion.java
IonComposition.java
IontrapParameter.java
Laser.java
LaserParameter.java
MaldiMatrix.java
MaldiParameter.java
Manufacturer.java
MassDetector.java
MassDetectorParameter.java
MethodOfCombination.java
MsMsRelationship.java
PeakAnnotated.java
PeakAnnotatedToIon.java
PeakAnnotatedToSmallMolecule.java
PeakAnnotation.java
PeakAnnotationComparator.java
PeakLabeled.java
PeakLabeledComparator.java
PeakList.java
PeakListToDataProcessing.java
PeakProcessing.java
Persubstitution.java
ReducingEnd.java
Scan.java
ScanImage.java
ScanToDataProcessing.java
SmallMolecule.java
SmallMoleculeComposition.java
Software.java
SoftwareType.java
Source.java
SourceParameter.java
SumAverageRelationship.java
TandemScanMethod.java
TofParameter.java
nmr
NmrEvidence.java
sugar
Anomer.java
Attachable.java
Basetype.java
Basetypes.java
BasicLinkage.java
BasicMolecule.java
CarbohydrateChemistry.java
CommonBasetype.java
CommonSubstituent.java
Composition.java
CustomBasetype.java
Element.java
GlycosidicLinkage.java
Ion.java
Linkage.java
LinkageType.java
Massclass.java
Modification.java
ModificationType.java
Molecule.java
Monosaccharide.java
PositionNotOccupiedException.java
PositionOccupiedException.java
PotentiallyIndefinite.java
Residue.java
ResidueFormat.java
RingConformation.java
SequenceFormat.java
SequenceFormatException.java
SimpleSubstituent.java
StereoConfig.java
Substituent.java
Substituents.java
Sugar.java
SugarAnnotation.java
SugarChemistryException.java
SugarException.java
SugarRepeat.java
SugarRepeatAnnotation.java
SugarSequence.java
SugarVisitor.java
Superclass.java
impl
ComplexMonosaccharide.java
GenericResidue.java
LinkageDisjunction.java
ResidueDisjunction.java
SimpleMonosaccharide.java
seq
CarbbankSequenceFormat.java
GlycoctSequenceFormat.java
GlycoctXmlSequenceFormat.java
IupacSequenceFormat.java
MultiSequenceFormat.java
SequenceIterator.java
grammar
AstTranslatorVisitor.java
GlycoctLexer.java
GlycoctParser.java
GlycoctParserAdaptor.java
GlycoctParserTokenTypes.java
GlycoctTest.java
IupacLexer.java
IupacParser.java
IupacParserAdaptor.java
IupacParserTokenTypes.java
IupacTest.java
LinkageToken.java
MonosacResidueToken.java
ParserAdaptor.java
RepeatResidueToken.java
ResidueToken.java
SequenceTestHarness.java
util
BitSet.java
CompositionVisitor.java
FTP_Client.java
JavaUtils.java
Logger.java
ProgressWatchable.java
StringUtils.java
Version.java
Visitor.java
XmlSerialiser.java
carbbank
CarbbankManager.java
CarbbankParser.java
CarbbankRecord.java
CarbbankTaxonomy.java
graph
BreadthFirstGraphVisitor.java
DepthFirstGraphVisitor.java
Edge.java
Graph.java
GraphIterator.java
GraphVisitor.java
Graphable.java
Graphs.java
Path.java
Tree.java
Vertex.java
mesh
MeshReference.java
ncbi
NcbiTaxonomy.java
test
FileReporterListener.java
eurocarbdb
CommandLineTest.java
dataaccess
CoreApplicationTest.java
EntityManagerTests.java
HibernateEntityManagerTest.java
HibernateXmlEntityManagerTest.java
core
AuthorTest.java
BiologicalContextTest.java
GlycanSequenceTest.java
ReferenceTest.java
SubQueryTest.java
seq
SubstructureQueryTest.java
indexes
IndexByMostEvidenceTest.java
sugar
AnomerTest.java
BasetypeTest.java
SugarTest.java
SuperclassTest.java
seq
GlycoctSequenceFormatTest.java
IupacSequenceFormatTest.java
SequenceFormatTest.java
util
BitSetTest.java
StringUtilsTest.java
VersionTest.java
VisitorTest.java
XmlSerialiserTest.java
graph
GraphTest.java
GraphVisitorTest.java
GraphsTest.java
resourcesdb
GraphicalVisualisationTest.java
MonosacNameParsingTest.java
package org.eurocarbdb.application.glycanbuilder; public enum Context { GLYCAN_CANVAS_ITEM }