/*
* EuroCarbDB, a framework for carbohydrate bioinformatics
*
* Copyright (c) 2006-2009, Eurocarb project, or third-party contributors as
* indicated by the @author tags or express copyright attribution
* statements applied by the authors.
*
* This copyrighted material is made available to anyone wishing to use, modify,
* copy, or redistribute it subject to the terms and conditions of the GNU
* Lesser General Public License, as published by the Free Software Foundation.
* A copy of this license accompanies this distribution in the file LICENSE.txt.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
* or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
* for more details.
*
* Last commit: $Rev: 1549 $ by $Author: glycoslave $ on $Date:: 2009-07-19 #$
*/
package org.eurocarbdb.action.hplc;
import org.eurocarbdb.action.*;
import org.eurocarbdb.dataaccess.*;
import org.eurocarbdb.dataaccess.hplc.*;
import com.opensymphony.xwork.Action;
import com.opensymphony.xwork.Preparable;
public class ProfileAnnotated extends EurocarbAction {
private Profile parent = null;
private Detector detector = null;
private Column column = null;
private Instrument instrument = null;
private HplcPeaksAnnotated anno = null;
private int detector_id;
private int instrument_id;
private int column_id;
private int parent_id;
private int profile_id;
public String execute() throws Exception {
if ( anno == null ) {
//Eurocarb.getEntityManager().store(parent);
return INPUT;
}
else {
parent = Eurocarb.getEntityManager().lookup( Profile.class, profile_id );
if (parent == null) { addFieldError("detector_id", "Invalid detector id"); return INPUT;}
//anno.setProfile(parent);
// Eurocarb.getEntityManager().store(parent);
return SUCCESS;
}
}
public HplcPeaksAnnotated getHplcPeaksAnnotated() {
return anno;
}
public void setHplcPeaksAnnotated (HplcPeaksAnnotated anno) {
this.anno = anno;
}
public Profile getProfile() {
return parent;
}
public void setProfile (Profile parent) {
this.parent = parent;
}
public void setProfileId(int id) {
this.profile_id = id;
}
public int getProfileId() {
return this.profile_id;
}
// getter and setter for evaluting parent ids
public Detector getDetector() {
return detector;
}
public void setDetector (Detector detector) {
this.detector = detector;
}
public void setDetectorId(int id) {
this.detector_id = id;
}
public int getDetectorId() {
return this.detector_id;
}
public Instrument getInstrument() {
return instrument;
}
public void setInstrument (Instrument instrument) {
this.instrument = instrument;
}
public void setInstrumentId(int id) {
this.instrument_id = id;
}
public int getInstrumentId() {
return this.instrument_id;
}
public Column getColumn() {
return column;
}
public void setColumn (Column column) {
this.column = column;
}
public void setColumnId(int id) {
this.column_id = id;
}
public int getColumnId() {
return this.column_id;
}
}