/*
* EuroCarbDB, a framework for carbohydrate bioinformatics
*
* Copyright (c) 2006-2009, Eurocarb project, or third-party contributors as
* indicated by the @author tags or express copyright attribution
* statements applied by the authors.
*
* This copyrighted material is made available to anyone wishing to use, modify,
* copy, or redistribute it subject to the terms and conditions of the GNU
* Lesser General Public License, as published by the Free Software Foundation.
* A copy of this license accompanies this distribution in the file LICENSE.txt.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
* or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
* for more details.
*
* Last commit: $Rev: 1930 $ by $Author: david@nixbioinf.org $ on $Date:: 2010-07-29 #$
*/
/*
* FragmentOptionsDialog1.java
*
* Created on June 5, 2006, 12:55 PM
*/
/**
*
* @author aceroni
*/
public class AnnotationOptionsDialog extends java.awt.Dialog {
/**
* Creates new form FragmentOptionsDialog1
*/
public AnnotationOptionsDialog(java.awt.Frame parent, boolean modal) {
super(parent, modal);
initComponents();
}
/** This method is called from within the constructor to
* initialize the form.
* WARNING: Do NOT modify this code. The content of this method is
* always regenerated by the Form Editor.
*/
// <editor-fold defaultstate="collapsed" desc=" Generated Code ">//GEN-BEGIN:initComponents
private void initComponents() {
field_bfragments = new javax.swing.JCheckBox();
field_cfragments = new javax.swing.JCheckBox();
field_yfragments = new javax.swing.JCheckBox();
field_zfragments = new javax.swing.JCheckBox();
jLabel1 = new javax.swing.JLabel();
jLabel2 = new javax.swing.JLabel();
button_ok = new javax.swing.JButton();
button_cancel = new javax.swing.JButton();
jLabel3 = new javax.swing.JLabel();
field_afragments = new javax.swing.JCheckBox();
field_xfragments = new javax.swing.JCheckBox();
jLabel14 = new javax.swing.JLabel();
jLabel15 = new javax.swing.JLabel();
jLabel16 = new javax.swing.JLabel();
jLabel17 = new javax.swing.JLabel();
field_accuracy = new javax.swing.JTextField();
field_accuracy_unit = new javax.swing.JComboBox();
jLabel18 = new javax.swing.JLabel();
jLabel4 = new javax.swing.JLabel();
jLabel5 = new javax.swing.JLabel();
jLabel6 = new javax.swing.JLabel();
jLabel8 = new javax.swing.JLabel();
field_compute_exchanges = new javax.swing.JCheckBox();
jLabel19 = new javax.swing.JLabel();
field_negative_mode = new javax.swing.JCheckBox();
jLabel9 = new javax.swing.JLabel();
field_no_cleavages = new javax.swing.JSpinner();
field_no_crossrings = new javax.swing.JSpinner();
field_max_no_charges = new javax.swing.JSpinner();
field_max_no_h_ions = new javax.swing.JSpinner();
field_max_no_na_ions = new javax.swing.JSpinner();
field_max_no_li_ions = new javax.swing.JSpinner();
field_max_no_k_ions = new javax.swing.JSpinner();
jLabel20 = new javax.swing.JLabel();
jLabel21 = new javax.swing.JLabel();
jLabel22 = new javax.swing.JLabel();
field_max_ex_na_ions = new javax.swing.JSpinner();
field_max_ex_li_ions = new javax.swing.JSpinner();
field_max_ex_k_ions = new javax.swing.JSpinner();
field_derive_from_parent = new javax.swing.JCheckBox();
field_internal_fragments = new javax.swing.JCheckBox();
jSeparator2 = new javax.swing.JSeparator();
jSeparator1 = new javax.swing.JSeparator();
setTitle("Fragment options");
addWindowListener(new java.awt.event.WindowAdapter() {
public void windowClosing(java.awt.event.WindowEvent evt) {
closeDialog(evt);
}
});
field_bfragments.setText("B fragments");
field_bfragments.setBorder(javax.swing.BorderFactory.createEmptyBorder(0, 0, 0, 0));
field_bfragments.setMargin(new java.awt.Insets(0, 0, 0, 0));
field_cfragments.setText("C fragments");
field_cfragments.setBorder(javax.swing.BorderFactory.createEmptyBorder(0, 0, 0, 0));
field_cfragments.setMargin(new java.awt.Insets(0, 0, 0, 0));
field_yfragments.setText("Y fragments");
field_yfragments.setBorder(javax.swing.BorderFactory.createEmptyBorder(0, 0, 0, 0));
field_yfragments.setMargin(new java.awt.Insets(0, 0, 0, 0));
field_zfragments.setText("Z fragments");
field_zfragments.setBorder(javax.swing.BorderFactory.createEmptyBorder(0, 0, 0, 0));
field_zfragments.setMargin(new java.awt.Insets(0, 0, 0, 0));
jLabel1.setText("Fragment types");
jLabel2.setText("Max n.o. cleavages");
button_ok.setText("OK");
button_cancel.setText("Cancel");
jLabel3.setText("Cross ring fragments");
field_afragments.setText("A fragments");
field_afragments.setBorder(javax.swing.BorderFactory.createEmptyBorder(0, 0, 0, 0));
field_afragments.setMargin(new java.awt.Insets(0, 0, 0, 0));
field_xfragments.setText("X fragments");
field_xfragments.setBorder(javax.swing.BorderFactory.createEmptyBorder(0, 0, 0, 0));
field_xfragments.setMargin(new java.awt.Insets(0, 0, 0, 0));
jLabel14.setText("Max # H ions");
jLabel15.setText("Max # Na ions");
jLabel16.setText("Max # Li ions");
jLabel17.setText("Accuracy");
field_accuracy.setText("9999.9999");
field_accuracy_unit.setModel(new javax.swing.DefaultComboBoxModel(new String[] { "ppm", "da" }));
jLabel18.setText("Max # K ions");
jLabel4.setFont(new java.awt.Font("Dialog", 2, 12));
jLabel4.setText("Fragment options");
jLabel5.setFont(new java.awt.Font("Dialog", 2, 12));
jLabel5.setText("Mass options");
jLabel6.setText("Max # charges");
jLabel8.setText("Max n.o. cross rings");
field_compute_exchanges.setBorder(javax.swing.BorderFactory.createEmptyBorder(0, 0, 0, 0));
field_compute_exchanges.setMargin(new java.awt.Insets(0, 0, 0, 0));
jLabel19.setText("Neutral exchanges");
field_negative_mode.setBorder(javax.swing.BorderFactory.createEmptyBorder(0, 0, 0, 0));
field_negative_mode.setMargin(new java.awt.Insets(0, 0, 0, 0));
jLabel9.setText("Negative mode");
jLabel20.setText("Max ex. Na ions");
jLabel21.setText("Max ex. Li ions");
jLabel22.setText("Max ex K ions");
field_derive_from_parent.setText("Derive options from parent ion");
field_derive_from_parent.setBorder(javax.swing.BorderFactory.createEmptyBorder(0, 0, 0, 0));
field_derive_from_parent.setMargin(new java.awt.Insets(0, 0, 0, 0));
field_internal_fragments.setText("Internal fragments");
field_internal_fragments.setBorder(javax.swing.BorderFactory.createEmptyBorder(0, 0, 0, 0));
field_internal_fragments.setMargin(new java.awt.Insets(0, 0, 0, 0));
org.jdesktop.layout.GroupLayout layout = new org.jdesktop.layout.GroupLayout(this);
this.setLayout(layout);
layout.setHorizontalGroup(
layout.createParallelGroup(org.jdesktop.layout.GroupLayout.LEADING)
.add(layout.createSequentialGroup()
.add(layout.createParallelGroup(org.jdesktop.layout.GroupLayout.LEADING)
.add(layout.createSequentialGroup()
.addContainerGap()
.add(layout.createParallelGroup(org.jdesktop.layout.GroupLayout.LEADING)
.add(jSeparator1, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, 362, Short.MAX_VALUE)
.add(jLabel4)
.add(layout.createSequentialGroup()
.add(12, 12, 12)
.add(layout.createParallelGroup(org.jdesktop.layout.GroupLayout.LEADING)
.add(jLabel1)
.add(jLabel3)
.add(jLabel2)
.add(jLabel8))
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED)
.add(layout.createParallelGroup(org.jdesktop.layout.GroupLayout.LEADING)
.add(field_bfragments)
.add(layout.createParallelGroup(org.jdesktop.layout.GroupLayout.TRAILING, false)
.add(org.jdesktop.layout.GroupLayout.LEADING, field_xfragments, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
.add(org.jdesktop.layout.GroupLayout.LEADING, field_afragments, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
.add(org.jdesktop.layout.GroupLayout.LEADING, field_zfragments, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
.add(org.jdesktop.layout.GroupLayout.LEADING, field_yfragments, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
.add(org.jdesktop.layout.GroupLayout.LEADING, field_cfragments, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE))
.add(field_internal_fragments)
.add(layout.createParallelGroup(org.jdesktop.layout.GroupLayout.TRAILING, false)
.add(org.jdesktop.layout.GroupLayout.LEADING, field_no_crossrings)
.add(org.jdesktop.layout.GroupLayout.LEADING, field_no_cleavages, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, 50, Short.MAX_VALUE))))
.add(jLabel5)
.add(layout.createParallelGroup(org.jdesktop.layout.GroupLayout.TRAILING, false)
.add(org.jdesktop.layout.GroupLayout.LEADING, jSeparator2)
.add(org.jdesktop.layout.GroupLayout.LEADING, layout.createSequentialGroup()
.add(12, 12, 12)
.add(layout.createParallelGroup(org.jdesktop.layout.GroupLayout.LEADING)
.add(jLabel9)
.add(jLabel14)
.add(jLabel15)
.add(jLabel16)
.add(jLabel18)
.add(jLabel6)
.add(jLabel17))
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED)
.add(layout.createParallelGroup(org.jdesktop.layout.GroupLayout.LEADING)
.add(layout.createSequentialGroup()
.add(layout.createParallelGroup(org.jdesktop.layout.GroupLayout.LEADING, false)
.add(field_max_no_k_ions)
.add(field_max_no_li_ions)
.add(field_max_no_na_ions)
.add(field_max_no_charges)
.add(field_negative_mode)
.add(field_max_no_h_ions, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE, 51, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE))
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED)
.add(layout.createParallelGroup(org.jdesktop.layout.GroupLayout.LEADING)
.add(layout.createSequentialGroup()
.add(layout.createParallelGroup(org.jdesktop.layout.GroupLayout.LEADING)
.add(jLabel20)
.add(jLabel21)
.add(jLabel22))
.add(29, 29, 29)
.add(layout.createParallelGroup(org.jdesktop.layout.GroupLayout.LEADING)
.add(field_max_ex_na_ions, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE, 56, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE)
.add(layout.createSequentialGroup()
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED)
.add(layout.createParallelGroup(org.jdesktop.layout.GroupLayout.LEADING)
.add(field_max_ex_k_ions, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, 56, Short.MAX_VALUE)
.add(field_max_ex_li_ions, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, 56, Short.MAX_VALUE)))))
.add(layout.createSequentialGroup()
.add(jLabel19)
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED)
.add(field_compute_exchanges))))
.add(layout.createParallelGroup(org.jdesktop.layout.GroupLayout.TRAILING, false)
.add(layout.createSequentialGroup()
.add(field_accuracy)
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED)
.add(field_accuracy_unit, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE, 60, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE))
.add(org.jdesktop.layout.GroupLayout.LEADING, field_derive_from_parent)))))))
.add(layout.createSequentialGroup()
.add(100, 100, 100)
.add(button_ok)
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED)
.add(button_cancel)))
.addContainerGap())
);
layout.linkSize(new java.awt.Component[] {button_cancel, button_ok}, org.jdesktop.layout.GroupLayout.HORIZONTAL);
layout.setVerticalGroup(
layout.createParallelGroup(org.jdesktop.layout.GroupLayout.LEADING)
.add(layout.createSequentialGroup()
.addContainerGap()
.add(jLabel4)
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED)
.add(layout.createParallelGroup(org.jdesktop.layout.GroupLayout.BASELINE)
.add(jLabel1)
.add(field_bfragments))
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED)
.add(field_cfragments)
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED)
.add(field_yfragments)
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED)
.add(field_zfragments)
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED)
.add(layout.createParallelGroup(org.jdesktop.layout.GroupLayout.BASELINE)
.add(jLabel3)
.add(field_afragments, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE, 15, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE))
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED)
.add(field_xfragments)
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED)
.add(field_internal_fragments)
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED)
.add(layout.createParallelGroup(org.jdesktop.layout.GroupLayout.BASELINE)
.add(jLabel2)
.add(field_no_cleavages, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE))
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED)
.add(layout.createParallelGroup(org.jdesktop.layout.GroupLayout.BASELINE)
.add(jLabel8)
.add(field_no_crossrings, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE))
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED)
.add(jLabel5)
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED)
.add(jSeparator1, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE, 10, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
.add(layout.createParallelGroup(org.jdesktop.layout.GroupLayout.BASELINE)
.add(jLabel9)
.add(field_negative_mode)
.add(jLabel19)
.add(field_compute_exchanges))
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED)
.add(layout.createParallelGroup(org.jdesktop.layout.GroupLayout.BASELINE)
.add(jLabel14)
.add(field_max_no_h_ions, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE))
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED)
.add(layout.createParallelGroup(org.jdesktop.layout.GroupLayout.BASELINE)
.add(jLabel15)
.add(field_max_no_na_ions, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE)
.add(jLabel20)
.add(field_max_ex_na_ions, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE))
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED)
.add(layout.createParallelGroup(org.jdesktop.layout.GroupLayout.BASELINE)
.add(jLabel16)
.add(field_max_no_li_ions, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE)
.add(jLabel21)
.add(field_max_ex_li_ions, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE))
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED)
.add(layout.createParallelGroup(org.jdesktop.layout.GroupLayout.BASELINE)
.add(jLabel18)
.add(field_max_no_k_ions, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE)
.add(jLabel22)
.add(field_max_ex_k_ions, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE))
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED)
.add(layout.createParallelGroup(org.jdesktop.layout.GroupLayout.BASELINE)
.add(jLabel6)
.add(field_max_no_charges, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE))
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED)
.add(field_derive_from_parent, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE, 15, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED)
.add(layout.createParallelGroup(org.jdesktop.layout.GroupLayout.BASELINE)
.add(jLabel17)
.add(field_accuracy_unit, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE, org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE)
.add(field_accuracy, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE, 27, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE))
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED)
.add(jSeparator2, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE, 10, org.jdesktop.layout.GroupLayout.PREFERRED_SIZE)
.addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED)
.add(layout.createParallelGroup(org.jdesktop.layout.GroupLayout.BASELINE)
.add(button_ok)
.add(button_cancel))
.addContainerGap())
);
pack();
}// </editor-fold>//GEN-END:initComponents
/** Closes the dialog */
private void closeDialog(java.awt.event.WindowEvent evt) {//GEN-FIRST:event_closeDialog
setVisible(false);
dispose();
}//GEN-LAST:event_closeDialog
/**
* @param args the command line arguments
*/
public static void main(String args[]) {
java.awt.EventQueue.invokeLater(new Runnable() {
public void run() {
new FragmentOptionsDialog(new java.awt.Frame(), true); }
});
}
// Variables declaration - do not modify//GEN-BEGIN:variables
private javax.swing.JButton button_cancel;
private javax.swing.JButton button_ok;
private javax.swing.JTextField field_accuracy;
private javax.swing.JComboBox field_accuracy_unit;
private javax.swing.JCheckBox field_afragments;
private javax.swing.JCheckBox field_bfragments;
private javax.swing.JCheckBox field_cfragments;
private javax.swing.JCheckBox field_compute_exchanges;
private javax.swing.JCheckBox field_derive_from_parent;
private javax.swing.JCheckBox field_internal_fragments;
private javax.swing.JSpinner field_max_ex_k_ions;
private javax.swing.JSpinner field_max_ex_li_ions;
private javax.swing.JSpinner field_max_ex_na_ions;
private javax.swing.JSpinner field_max_no_charges;
private javax.swing.JSpinner field_max_no_h_ions;
private javax.swing.JSpinner field_max_no_k_ions;
private javax.swing.JSpinner field_max_no_li_ions;
private javax.swing.JSpinner field_max_no_na_ions;
private javax.swing.JCheckBox field_negative_mode;
private javax.swing.JSpinner field_no_cleavages;
private javax.swing.JSpinner field_no_crossrings;
private javax.swing.JCheckBox field_xfragments;
private javax.swing.JCheckBox field_yfragments;
private javax.swing.JCheckBox field_zfragments;
private javax.swing.JLabel jLabel1;
private javax.swing.JLabel jLabel14;
private javax.swing.JLabel jLabel15;
private javax.swing.JLabel jLabel16;
private javax.swing.JLabel jLabel17;
private javax.swing.JLabel jLabel18;
private javax.swing.JLabel jLabel19;
private javax.swing.JLabel jLabel2;
private javax.swing.JLabel jLabel20;
private javax.swing.JLabel jLabel21;
private javax.swing.JLabel jLabel22;
private javax.swing.JLabel jLabel3;
private javax.swing.JLabel jLabel4;
private javax.swing.JLabel jLabel5;
private javax.swing.JLabel jLabel6;
private javax.swing.JLabel jLabel8;
private javax.swing.JLabel jLabel9;
private javax.swing.JSeparator jSeparator1;
private javax.swing.JSeparator jSeparator2;
// End of variables declaration//GEN-END:variables
}