/*
* This file is part of ADDIS (Aggregate Data Drug Information System).
* ADDIS is distributed from http://drugis.org/.
* Copyright © 2009 Gert van Valkenhoef, Tommi Tervonen.
* Copyright © 2010 Gert van Valkenhoef, Tommi Tervonen, Tijs Zwinkels,
* Maarten Jacobs, Hanno Koeslag, Florin Schimbinschi, Ahmad Kamal, Daniel
* Reid.
* Copyright © 2011 Gert van Valkenhoef, Ahmad Kamal, Daniel Reid, Florin
* Schimbinschi.
* Copyright © 2012 Gert van Valkenhoef, Daniel Reid, Joël Kuiper, Wouter
* Reckman.
* Copyright © 2013 Gert van Valkenhoef, Joël Kuiper.
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
package org.drugis.addis.presentation;
import java.beans.PropertyChangeEvent;
import java.beans.PropertyChangeListener;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import javax.swing.table.TableModel;
import org.drugis.addis.entities.OutcomeMeasure;
import org.drugis.addis.entities.OutcomeMeasure.Direction;
import org.drugis.addis.entities.Study;
import org.drugis.addis.entities.analysis.NetworkMetaAnalysis;
import org.drugis.addis.entities.treatment.TreatmentDefinition;
import org.drugis.addis.gui.AddisMCMCPresentation;
import org.drugis.common.threading.status.AbstractProgressModel;
import org.drugis.mtc.model.Network;
import org.drugis.mtc.model.Treatment;
import org.drugis.mtc.parameterization.BasicParameter;
import org.drugis.mtc.presentation.ConsistencyWrapper;
import org.drugis.mtc.presentation.InconsistencyWrapper;
import org.drugis.mtc.presentation.MTCModelWrapper;
import org.drugis.mtc.presentation.NodeSplitWrapper;
import org.drugis.mtc.presentation.results.NodeSplitResultsTableModel;
import org.drugis.mtc.presentation.results.RankProbabilityDataset;
import org.drugis.mtc.presentation.results.RankProbabilityTableModel;
import org.jfree.data.category.CategoryDataset;
import com.jgoodies.binding.list.ArrayListModel;
@SuppressWarnings("serial")
public class NetworkMetaAnalysisPresentation extends AbstractMetaAnalysisPresentation<NetworkMetaAnalysis> {
private Map<MTCModelWrapper<TreatmentDefinition>, AddisMCMCPresentation> d_models;
public NetworkMetaAnalysisPresentation(NetworkMetaAnalysis bean, PresentationModelFactory mgr) {
super(bean, mgr);
d_models = new HashMap<MTCModelWrapper<TreatmentDefinition>, AddisMCMCPresentation>();
addModel(getConsistencyModel(), getBean().getOutcomeMeasure(), getBean().getName() + " \u2014 " + getConsistencyModel().getDescription());
addModel(getInconsistencyModel(), getBean().getOutcomeMeasure(), getBean().getName() + " \u2014 " + getInconsistencyModel().getDescription());
for (BasicParameter p : getBean().getSplitParameters()) {
NodeSplitWrapper<TreatmentDefinition> nsw = getBean().getNodeSplitModel(p);
addModel(nsw, getBean().getOutcomeMeasure(), getBean().getName() + " \u2014 " + nsw.getDescription());
}
for(MTCModelWrapper<TreatmentDefinition> model : d_models.keySet()) {
model.addPropertyChangeListener(new PropertyChangeListener() {
public void propertyChange(PropertyChangeEvent evt) {
if(evt.getPropertyName().equals(MTCModelWrapper.PROPERTY_DESTROYED)) {
d_models.remove(evt.getSource());
}
}
});
}
}
public TreatmentDefinition getTreatmentDefinition(Treatment t) {
return getBean().getBuilder().getTreatmentMap().getKey(t);
}
public TreatmentDefinitionsGraphModel getStudyGraphModel() {
return new TreatmentDefinitionsGraphModel(new ArrayListModel<Study>(getBean().getIncludedStudies()),
new ArrayListModel<TreatmentDefinition>(getBean().getAlternatives()), new UnmodifiableHolder<OutcomeMeasure>(getBean().getOutcomeMeasure()));
}
public CategoryDataset getRankProbabilityDataset() {
return new RankProbabilityDataset(getBean().getConsistencyModel().getRankProbabilities(), true);
}
public TableModel getRankProbabilityTableModel() {
return new RankProbabilityTableModel(getBean().getConsistencyModel().getRankProbabilities(), true);
}
public String getRankProbabilityRankChartNote() {
if(getBean().getOutcomeMeasure().getDirection() == Direction.HIGHER_IS_BETTER) {
//return "A lower rank indicates the drug is better";
return "Rank 1 is best, rank N is worst.";
} else {
//return "A higher rank indicates the drug is better";
return "Rank 1 is worst, rank N is best.";
}
}
public AbstractProgressModel getProgressModel(MTCModelWrapper<TreatmentDefinition> mtc) {
return d_models.get(mtc).getProgressModel();
}
private void addModel(MTCModelWrapper<TreatmentDefinition> mtc, OutcomeMeasure om, String name) {
d_models.put(mtc, new AddisMCMCPresentation(mtc, om, name));
}
public List<BasicParameter> getSplitParameters() {
return getBean().getSplitParameters();
}
public NodeSplitWrapper<TreatmentDefinition> getNodeSplitModel(BasicParameter p) {
return getBean().getNodeSplitModel(p);
}
public ConsistencyWrapper<TreatmentDefinition> getConsistencyModel() {
return getBean().getConsistencyModel();
}
public InconsistencyWrapper<TreatmentDefinition> getInconsistencyModel() {
return getBean().getInconsistencyModel();
}
public List<TreatmentDefinition> getAlternatives() {
return getBean().getAlternatives();
}
public boolean isContinuous() {
return getBean().isContinuous();
}
public Network getNetwork() {
return getBean().getNetwork();
}
public AddisMCMCPresentation getWrappedModel(MTCModelWrapper<TreatmentDefinition> m) {
if(d_models.get(m) == null) {
addModel(m, getBean().getOutcomeMeasure(), getBean().getName() + " \u2014 " + m.getDescription());
}
return d_models.get(m);
}
public NodeSplitResultsTableModel createNodeSplitResultsTableModel() {
List<NodeSplitWrapper<?>> list = new ArrayList<NodeSplitWrapper<?>>();
for (BasicParameter p : this.getSplitParameters()) {
list.add(this.getNodeSplitModel(p));
}
final List<NodeSplitWrapper<?>> nodeSplitModels = list;
return new NodeSplitResultsTableModel(this.getConsistencyModel(), nodeSplitModels);
}
}