/*
* This file is part of ADDIS (Aggregate Data Drug Information System).
* ADDIS is distributed from http://drugis.org/.
* Copyright © 2009 Gert van Valkenhoef, Tommi Tervonen.
* Copyright © 2010 Gert van Valkenhoef, Tommi Tervonen, Tijs Zwinkels,
* Maarten Jacobs, Hanno Koeslag, Florin Schimbinschi, Ahmad Kamal, Daniel
* Reid.
* Copyright © 2011 Gert van Valkenhoef, Ahmad Kamal, Daniel Reid, Florin
* Schimbinschi.
* Copyright © 2012 Gert van Valkenhoef, Daniel Reid, Joël Kuiper, Wouter
* Reckman.
* Copyright © 2013 Gert van Valkenhoef, Joël Kuiper.
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
package org.drugis.addis.gui.builder;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.util.Arrays;
import javax.swing.JButton;
import javax.swing.JComponent;
import javax.swing.JPanel;
import org.drugis.addis.entities.analysis.AbstractMetaAnalysis;
import org.drugis.addis.entities.analysis.BenefitRiskAnalysis;
import org.drugis.addis.entities.analysis.MetaAnalysis;
import org.drugis.addis.entities.relativeeffect.Distribution;
import org.drugis.addis.entities.treatment.TreatmentDefinition;
import org.drugis.addis.gui.AddisMCMCPresentation;
import org.drugis.addis.gui.AddisWindow;
import org.drugis.addis.gui.AuxComponentFactory;
import org.drugis.addis.gui.CategoryKnowledgeFactory;
import org.drugis.addis.gui.components.EntityTablePanel;
import org.drugis.addis.gui.renderer.DistributionParameterCellRenderer;
import org.drugis.addis.gui.renderer.DistributionQuantileCellRenderer;
import org.drugis.addis.presentation.MetaBenefitRiskPresentation;
import org.drugis.common.gui.ImageExporter;
import org.drugis.common.gui.LayoutUtil;
import org.drugis.common.gui.table.EnhancedTable;
import org.drugis.common.gui.table.TablePanel;
import org.drugis.mtc.gui.MainWindow;
import org.drugis.mtc.gui.results.SimulationComponentFactory;
import com.jgoodies.forms.builder.PanelBuilder;
import com.jgoodies.forms.layout.CellConstraints;
import com.jgoodies.forms.layout.FormLayout;
public class MetaBenefitRiskView extends AbstractBenefitRiskView<TreatmentDefinition, MetaBenefitRiskPresentation> {
public MetaBenefitRiskView(final MetaBenefitRiskPresentation pm, final AddisWindow mainWindow) {
super(pm, mainWindow);
}
@Override
protected JPanel buildOverviewPanel() {
final FormLayout layout = new FormLayout(
"fill:0:grow",
"p, 3dlu, p, 3dlu, p, 3dlu, p, 3dlu, p");
final PanelBuilder builder = new PanelBuilder(layout, new JPanel());
builder.setDefaultDialogBorder();
builder.setOpaque(true);
final CellConstraints cc = new CellConstraints();
builder.addSeparator(CategoryKnowledgeFactory.getCategoryKnowledge(BenefitRiskAnalysis.class).getSingularCapitalized(), cc.xy(1, 1));
builder.add(buildOverviewPart(), cc.xy(1, 3));
builder.addSeparator("Included Analyses", cc.xy(1, 5));
builder.add(buildAnalysesPart(), cc.xy(1, 7));
final JComponent progressBars = buildProgressBars();
builder.add(progressBars, cc.xy(1, 9));
return builder.getPanel();
}
private JComponent buildProgressBars() {
final FormLayout layout = new FormLayout(
"pref, 3dlu, fill:0:grow",
"p, 3dlu, p, 3dlu, p");
final PanelBuilder builder = new PanelBuilder(layout);
final CellConstraints cc = new CellConstraints();
builder.addSeparator("Sub-analyses are required. Please run them.", cc.xyw(1, 1, 3));
builder.add(createRunAllButton(), cc.xyw(1, 3, 3));
int row = 3;
for (final AddisMCMCPresentation mw : d_pm.getWrappedModels()) {
LayoutUtil.addRow(layout);
row += 2;
builder.add(SimulationComponentFactory.createSimulationControls(mw, d_mainWindow, true, AuxComponentFactory.COLOR_NOTE, d_mainWindow.getReloadRightPanelAction(null)), cc.xyw(1, row, 3));
}
return builder.getPanel();
}
private JButton createRunAllButton() {
final JButton button = new JButton(MainWindow.IMAGELOADER.getIcon(org.drugis.mtc.gui.FileNames.ICON_RUN));
button.setText("Run all required sub-analyses");
button.setToolTipText("Run all simulations");
button.addActionListener(new ActionListener() {
@Override
public void actionPerformed(final ActionEvent e) {
d_pm.startAllSimulations();
}
});
return button;
}
protected JButton createSaveImageButton(final JComponent chart) {
final JButton button = new JButton("Save Image");
button.addActionListener(new ActionListener() {
@Override
public void actionPerformed(final ActionEvent arg0) {
ImageExporter.writeImage(d_mainWindow, chart, (int) chart.getSize().getWidth(), (int) chart.getSize().getHeight());
}
});
return button;
}
protected JComponent buildAnalysesPart() {
final String[] formatter = {
MetaAnalysis.PROPERTY_NAME,
MetaAnalysis.PROPERTY_TYPE,
MetaAnalysis.PROPERTY_INDICATION,
MetaAnalysis.PROPERTY_OUTCOME_MEASURE,
MetaAnalysis.PROPERTY_ALTERNATIVES,
MetaAnalysis.PROPERTY_INCLUDED_STUDIES,
MetaAnalysis.PROPERTY_SAMPLE_SIZE};
return new EntityTablePanel(AbstractMetaAnalysis.class, d_pm.getAnalysesModel(), Arrays.asList(formatter), d_mainWindow, d_pm.getFactory());
}
@Override
protected JPanel buildMeasurementsPanel() {
final CellConstraints cc = new CellConstraints();
final FormLayout layout = new FormLayout("fill:0:grow",
"p, 3dlu, p, 3dlu, p, 3dlu, p, 3dlu, p, 3dlu, p, 3dlu, p, 3dlu, p, 3dlu, p");
final PanelBuilder builder = new PanelBuilder(layout);
builder.setDefaultDialogBorder();
builder.setOpaque(true);
int row = 1;
final int width = 1;
builder.addSeparator("Relative effect distributions", cc.xyw(1, row, width));
row += 2;
builder.add(AuxComponentFactory.createTextPane("<p>Relative measurements: log odds-ratio or mean difference, with "
+ d_pm.getBaseline().getLabel() +" as the common comparator.</p>"),cc.xy(1, row));
row += 2;
final EnhancedTable table = EnhancedTable.createWithSorter(d_pm.getRelativeMeasurementTableModel());
table.setDefaultRenderer(Distribution.class, new DistributionParameterCellRenderer());
table.autoSizeColumns();
builder.add(new TablePanel(table), cc.xy(1, row));
row += 2;
builder.addSeparator("Baseline effect distributions", cc.xyw(1, row, width));
row += 2;
builder.add(AuxComponentFactory.createTextPane("<p>Baseline measurements: log odds or mean for " +
d_pm.getBaseline().getLabel() + ". The method used to derive the assumed odds or mean are heuristic, "
+ "and these values should be interpreted with care.</p>"), cc.xy(1, row));
row += 2;
final EnhancedTable table2 = EnhancedTable.createWithSorter(d_pm.getBaselineMeasurementTableModel());
table2.setDefaultRenderer(Distribution.class, new DistributionParameterCellRenderer());
table2.autoSizeColumns();
builder.add(new TablePanel(table2), cc.xy(1, row));
row += 2;
builder.addSeparator("Measurements", cc.xyw(1, row, width));
row += 2;
builder.add(AuxComponentFactory.createTextPane("<p>Measurements: incidence approximated with logit-Normal distribution," +
" or continuous variables approximated with a Normal distribution.</p>"),
cc.xy(1, row));
row += 2;
final EnhancedTable table3 = EnhancedTable.createWithSorter(d_pm.getMeasurementTableModel());
table3.setDefaultRenderer(Distribution.class, new DistributionQuantileCellRenderer());
table3.autoSizeColumns();
builder.add(new TablePanel(table3), cc.xy(1, row));
row += 2;
return builder.getPanel();
}
}