/*
* This file is part of ADDIS (Aggregate Data Drug Information System).
* ADDIS is distributed from http://drugis.org/.
* Copyright © 2009 Gert van Valkenhoef, Tommi Tervonen.
* Copyright © 2010 Gert van Valkenhoef, Tommi Tervonen, Tijs Zwinkels,
* Maarten Jacobs, Hanno Koeslag, Florin Schimbinschi, Ahmad Kamal, Daniel
* Reid.
* Copyright © 2011 Gert van Valkenhoef, Ahmad Kamal, Daniel Reid, Florin
* Schimbinschi.
* Copyright © 2012 Gert van Valkenhoef, Daniel Reid, Joël Kuiper, Wouter
* Reckman.
* Copyright © 2013 Gert van Valkenhoef, Joël Kuiper.
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
package org.drugis.addis.gui.builder;
import java.awt.Color;
import java.awt.event.ActionEvent;
import javax.swing.AbstractAction;
import javax.swing.BorderFactory;
import javax.swing.JButton;
import javax.swing.JComponent;
import javax.swing.JLabel;
import javax.swing.JPanel;
import javax.swing.JScrollPane;
import javax.swing.JTabbedPane;
import org.drugis.addis.entities.ContinuousVariableType;
import org.drugis.addis.entities.RateVariableType;
import org.drugis.addis.entities.Study;
import org.drugis.addis.entities.analysis.PairWiseMetaAnalysis;
import org.drugis.addis.entities.relativeeffect.BasicMeanDifference;
import org.drugis.addis.entities.relativeeffect.BasicOddsRatio;
import org.drugis.addis.entities.relativeeffect.BasicRiskDifference;
import org.drugis.addis.entities.relativeeffect.BasicRiskRatio;
import org.drugis.addis.entities.relativeeffect.BasicStandardisedMeanDifference;
import org.drugis.addis.entities.relativeeffect.RelativeEffect;
import org.drugis.addis.forestplot.ForestPlot;
import org.drugis.addis.gui.AddisWindow;
import org.drugis.addis.gui.CategoryKnowledgeFactory;
import org.drugis.addis.gui.components.AddisTabbedPane;
import org.drugis.addis.gui.components.RelativeEffectCanvas;
import org.drugis.addis.presentation.PairWiseMetaAnalysisPresentation;
import org.drugis.common.gui.ImageExporter;
import org.drugis.common.gui.ViewBuilder;
import com.jgoodies.forms.builder.ButtonBarBuilder2;
import com.jgoodies.forms.builder.PanelBuilder;
import com.jgoodies.forms.layout.CellConstraints;
import com.jgoodies.forms.layout.FormLayout;
public class PairWiseMetaAnalysisView extends AbstractMetaAnalysisView<PairWiseMetaAnalysisPresentation>
implements ViewBuilder {
public PairWiseMetaAnalysisView(PairWiseMetaAnalysisPresentation pm, AddisWindow mainWindow) {
super(pm, mainWindow);
}
public JComponent buildPanel() {
JTabbedPane tabbedPane = new AddisTabbedPane();
tabbedPane.addTab("Overview", buildOverviewPanel());
tabbedPane.addTab("Results", getPlotsPanel(false));
return tabbedPane;
}
private JPanel buildOverviewPanel() {
FormLayout layout = new FormLayout(
"pref:grow:fill",
"p, 3dlu, p, 3dlu, p, 3dlu, p");
PanelBuilder builder = new PanelBuilder(layout);
builder.setDefaultDialogBorder();
CellConstraints cc = new CellConstraints();
builder.addSeparator(CategoryKnowledgeFactory.getCategoryKnowledge(PairWiseMetaAnalysis.class).getSingularCapitalized(), cc.xy(1, 1));
builder.add(buildPropertiesPart(), cc.xy(1, 3));
builder.addSeparator(CategoryKnowledgeFactory.getCategoryKnowledge(Study.class).getPlural(), cc.xy(1, 5));
builder.add(buildStudiesPart(), cc.xy(1, 7));
return builder.getPanel();
}
public JComponent getPlotsPanel(boolean isWizard) {
if (d_pm.getAnalysisType() instanceof RateVariableType) {
return buildRatePlotsPart(isWizard);
}
if (d_pm.getAnalysisType() instanceof ContinuousVariableType) {
return buildContinuousPlotsPart(isWizard);
}
throw new RuntimeException("Unexpected case: " +
d_pm.getAnalysisType() + " is not a supported type of endpoint");
}
private JComponent buildContinuousPlotsPart(boolean isWizard) {
FormLayout layout = new FormLayout(
"pref:grow:fill",
"p, 3dlu, p, 3dlu, p, 3dlu, p");
PanelBuilder builder = new PanelBuilder(layout);
builder.setDefaultDialogBorder();
CellConstraints cc = new CellConstraints();
builder.addSeparator("Mean difference", cc.xy(1, 1));
builder.add(buildRelativeEffectPart(BasicMeanDifference.class, isWizard), cc.xy(1, 3));
if (!isWizard) {
builder.addSeparator("Standardised mean difference", cc.xy(1, 5));
builder.add(buildRelativeEffectPart(BasicStandardisedMeanDifference.class, isWizard), cc.xy(1, 7));
}
return builder.getPanel();
}
private JComponent buildRatePlotsPart(boolean isWizard) {
FormLayout layout = new FormLayout(
"pref:grow:fill",
"p, 3dlu, p, 3dlu, p, 3dlu, p, 3dlu, p, 3dlu, p, 3dlu, p");
PanelBuilder builder = new PanelBuilder(layout);
builder.setDefaultDialogBorder();
CellConstraints cc = new CellConstraints();
builder.addSeparator("Odds ratio", cc.xy(1, 1));
builder.add(buildRelativeEffectPart(BasicOddsRatio.class, isWizard), cc.xy(1,5));
if (!isWizard) {
builder.addSeparator("Risk ratio", cc.xy(1, 7));
builder.add(buildRelativeEffectPart(BasicRiskRatio.class, isWizard), cc.xy(1, 9));
builder.addSeparator("Risk difference", cc.xy(1, 11));
builder.add(buildRelativeEffectPart(BasicRiskDifference.class, isWizard), cc.xy(1, 13));
}
return builder.getPanel();
}
@SuppressWarnings("serial")
private JComponent buildRelativeEffectPart(Class<? extends RelativeEffect<?>> type, boolean isWizard) {
FormLayout layout1 = new FormLayout(
"left:0:grow",
"p, 3dlu, p, 3dlu, p");
FormLayout layout2 = new FormLayout(
"pref:grow:fill",
"p, 3dlu");
JPanel encapsulating = new JPanel(layout1);
PanelBuilder builder = new PanelBuilder(layout2);
CellConstraints cc = new CellConstraints();
final RelativeEffectCanvas canvas = new RelativeEffectCanvas(d_pm.getForestPlotPresentation(type));
builder.add(canvas, cc.xy(1, 1));
builder.setBorder(BorderFactory.createLineBorder(Color.black));
builder.setBackground(Color.white);
JScrollPane scrollPane = new JScrollPane(builder.getPanel());
scrollPane.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_NEVER);
scrollPane.setViewportBorder(null);
encapsulating.add(scrollPane,cc.xy(1, 1));
if (!isWizard) {
JButton saveBtn = new JButton("Save Image");
saveBtn.addActionListener(new AbstractAction() {
public void actionPerformed(ActionEvent e) {
ForestPlot plot = canvas.getPlot();
ImageExporter.writeImage(d_parent, plot, (int) plot.getSize().getWidth(),(int) plot.getSize().getHeight());
}
});
ButtonBarBuilder2 bbuilder = new ButtonBarBuilder2();
bbuilder.addButton(saveBtn);
encapsulating.add(new JLabel(" "), cc.xy(1, 3));
encapsulating.add(bbuilder.getPanel(), cc.xy(1, 5));
}
return encapsulating;
}
}