/******************************************************************************* * Open Behavioral Health Information Technology Architecture (OBHITA.org) * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions are met: * * Redistributions of source code must retain the above copyright * notice, this list of conditions and the following disclaimer. * * Redistributions in binary form must reproduce the above copyright * notice, this list of conditions and the following disclaimer in the * documentation and/or other materials provided with the distribution. * * Neither the name of the <organization> nor the * names of its contributors may be used to endorse or promote products * derived from this software without specific prior written permission. * * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED * WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE * DISCLAIMED. IN NO EVENT SHALL <COPYRIGHT HOLDER> BE LIABLE FOR ANY * DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES * (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND * ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS * SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. ******************************************************************************/ package gov.samhsa.acs.documentsegmentation.tools; import gov.samhsa.acs.common.tool.DocumentAccessor; import gov.samhsa.acs.common.tool.DocumentXmlConverter; import gov.samhsa.acs.common.tool.exception.DocumentXmlConverterException; import gov.samhsa.acs.documentsegmentation.tools.exception.DocumentSegmentationException; import javax.xml.parsers.DocumentBuilderFactory; import javax.xml.parsers.ParserConfigurationException; import javax.xml.xpath.XPathExpressionException; import org.w3c.dom.Document; import org.w3c.dom.Node; /** * The Class EmbeddedClinicalDocumentExtractorImpl. */ public class EmbeddedClinicalDocumentExtractorImpl implements EmbeddedClinicalDocumentExtractor { /** The document xml converter. */ private final DocumentXmlConverter documentXmlConverter; /** The document accessor. */ private final DocumentAccessor documentAccessor; /** The Constant XPATH_CLINICALDOCUMENT. */ public static final String XPATH_CLINICALDOCUMENT = "//hl7:ClinicalDocument"; /** * Instantiates a new embedded clinical document extractor impl. * * @param documentXmlConverter * the document xml converter * @param documentAccessor * the document accessor */ public EmbeddedClinicalDocumentExtractorImpl( DocumentXmlConverter documentXmlConverter, DocumentAccessor documentAccessor) { super(); this.documentXmlConverter = documentXmlConverter; this.documentAccessor = documentAccessor; } /* * (non-Javadoc) * * @see * gov.samhsa.acs.documentsegmentation.tools.EmbeddedClinicalDocumentExtractor * #extractClinicalDocumentFromFactModel(java.lang.String) */ @Override public String extractClinicalDocumentFromFactModel(String factModel) throws DocumentSegmentationException { Document newXmlDocument; try { final Document factModelDocument = documentXmlConverter .loadDocument(factModel); final Node clinicalDocumentNode = documentAccessor.getNode( factModelDocument, XPATH_CLINICALDOCUMENT); // Create new document newXmlDocument = DocumentBuilderFactory.newInstance() .newDocumentBuilder().newDocument(); // Import ClinicalDocument node to the new document final Node copyNode = newXmlDocument.importNode( clinicalDocumentNode, true); // Add ClinicalDocument node as the root node to the document newXmlDocument.appendChild(copyNode); } catch (XPathExpressionException | ParserConfigurationException | DocumentXmlConverterException e) { throw new DocumentSegmentationException(e); } return documentXmlConverter.convertXmlDocToString(newXmlDocument); } }