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package gov.samhsa.acs.documentsegmentation.tools;
import gov.samhsa.acs.common.tool.DocumentAccessor;
import gov.samhsa.acs.common.tool.DocumentXmlConverter;
import gov.samhsa.acs.common.tool.exception.DocumentXmlConverterException;
import gov.samhsa.acs.documentsegmentation.tools.exception.DocumentSegmentationException;
import javax.xml.parsers.DocumentBuilderFactory;
import javax.xml.parsers.ParserConfigurationException;
import javax.xml.xpath.XPathExpressionException;
import org.w3c.dom.Document;
import org.w3c.dom.Node;
/**
* The Class EmbeddedClinicalDocumentExtractorImpl.
*/
public class EmbeddedClinicalDocumentExtractorImpl implements
EmbeddedClinicalDocumentExtractor {
/** The document xml converter. */
private final DocumentXmlConverter documentXmlConverter;
/** The document accessor. */
private final DocumentAccessor documentAccessor;
/** The Constant XPATH_CLINICALDOCUMENT. */
public static final String XPATH_CLINICALDOCUMENT = "//hl7:ClinicalDocument";
/**
* Instantiates a new embedded clinical document extractor impl.
*
* @param documentXmlConverter
* the document xml converter
* @param documentAccessor
* the document accessor
*/
public EmbeddedClinicalDocumentExtractorImpl(
DocumentXmlConverter documentXmlConverter,
DocumentAccessor documentAccessor) {
super();
this.documentXmlConverter = documentXmlConverter;
this.documentAccessor = documentAccessor;
}
/*
* (non-Javadoc)
*
* @see
* gov.samhsa.acs.documentsegmentation.tools.EmbeddedClinicalDocumentExtractor
* #extractClinicalDocumentFromFactModel(java.lang.String)
*/
@Override
public String extractClinicalDocumentFromFactModel(String factModel)
throws DocumentSegmentationException {
Document newXmlDocument;
try {
final Document factModelDocument = documentXmlConverter
.loadDocument(factModel);
final Node clinicalDocumentNode = documentAccessor.getNode(
factModelDocument, XPATH_CLINICALDOCUMENT);
// Create new document
newXmlDocument = DocumentBuilderFactory.newInstance()
.newDocumentBuilder().newDocument();
// Import ClinicalDocument node to the new document
final Node copyNode = newXmlDocument.importNode(
clinicalDocumentNode, true);
// Add ClinicalDocument node as the root node to the document
newXmlDocument.appendChild(copyNode);
} catch (XPathExpressionException | ParserConfigurationException
| DocumentXmlConverterException e) {
throw new DocumentSegmentationException(e);
}
return documentXmlConverter.convertXmlDocToString(newXmlDocument);
}
}