/*
* #%L
* org.gitools.ui.app
* %%
* Copyright (C) 2013 - 2014 Universitat Pompeu Fabra - Biomedical Genomics group
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-3.0.html>.
* #L%
*/
package org.gitools.ui.app.batch.tools;
import org.gitools.ui.app.commands.SortByAnnotationsCommand;
import org.gitools.ui.core.commands.Command;
import org.gitools.ui.core.commands.tools.HeaderTool;
import org.kohsuke.args4j.Option;
public class SortByAnnotationTool extends HeaderTool {
@Option(name = "-s", aliases = "--sort", metaVar = "<sort>", required = true,
usage = "Sort according to header. Specify either asc[ending] or desc[ending].")
protected String sort;
public SortByAnnotationTool() {
super();
}
@Override
public String getName() {
return "sort-by-annotation";
}
@Override
protected Command newJob() {
return new SortByAnnotationsCommand(heatmap, dimensionKey, pattern, sort);
}
}