/*
* #%L
* gitools-ui-app
* %%
* Copyright (C) 2013 Universitat Pompeu Fabra - Biomedical Genomics group
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-3.0.html>.
* #L%
*/
package org.gitools.ui.app.batch.tools;
import org.gitools.ui.app.commands.CloseAndSaveCommand;
import org.gitools.ui.core.commands.Command;
import org.gitools.ui.core.commands.tools.HeatmapTool;
import org.kohsuke.args4j.Option;
import java.io.File;
public class CloseAndSaveHeatmapTool extends HeatmapTool {
@Option(name = "-s", aliases = "--save", required = false,
usage = "Save current state as heatmap")
protected boolean save;
@Option(name = "-a", aliases = "--as", metaVar = "<FILE_NAME>", required = false,
usage = "path and filename indicating where to save the heatmap")
protected String saveAsFilename;
@Option(name = "-o", aliases = "--optimize", required = false,
usage = "Optimize data file (slower saving process)")
protected boolean optimize = true;
@Option(name = "-d", aliases = "--discard-hidden", required = false,
usage = "Discard hidden data")
protected boolean discardHidden = false;
public CloseAndSaveHeatmapTool() {
super();
}
@Override
public String getName() {
return "close";
}
@Override
protected Command newJob() {
return new CloseAndSaveCommand(save,
(saveAsFilename != null) ? new File(saveAsFilename) : null,
optimize, discardHidden, heatmap);
}
}