/*
* #%L
* gitools-core
* %%
* Copyright (C) 2013 Universitat Pompeu Fabra - Biomedical Genomics group
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-3.0.html>.
* #L%
*/
package org.gitools.matrix.model.hashmatrix;
import org.gitools.api.matrix.IMatrixDimension;
import org.gitools.api.matrix.MatrixDimensionKey;
import org.gitools.matrix.model.AbstractMatrixDimension;
import java.util.HashMap;
import java.util.Map;
import java.util.Set;
import java.util.concurrent.ConcurrentHashMap;
public class HashMatrixDimension extends AbstractMatrixDimension {
private Map<String, Integer> labelToIndex;
private Map<Integer, String> indexToLabel;
public HashMatrixDimension(MatrixDimensionKey id) {
super(id);
this.labelToIndex = new ConcurrentHashMap<>();
this.indexToLabel = new ConcurrentHashMap<>();
}
public HashMatrixDimension(MatrixDimensionKey id, Iterable<String> labels) {
this(id);
for (String label : labels) {
add(label);
}
}
@Override
public int size() {
return labelToIndex.size();
}
@Override
public String getLabel(int index) {
return indexToLabel.get(index);
}
@Override
public int indexOf(String label) {
if (labelToIndex.containsKey(label)) {
return labelToIndex.get(label);
}
return -1;
}
void add(String label) {
if (labelToIndex.containsKey(label)) {
return;
}
Integer nextIndex = this.labelToIndex.size();
this.labelToIndex.put(label, nextIndex);
this.indexToLabel.put(nextIndex, label);
}
@Override
public IMatrixDimension subset(Set<String> identifiers) {
return new HashMatrixDimension(getId(), identifiers);
}
public void optimize(Iterable<String> identifiers) {
Map<String, Integer> allIds = labelToIndex;
this.labelToIndex = new HashMap<>();
this.indexToLabel = new HashMap<>();
for (String id : identifiers) {
add(id);
if (allIds.containsKey(id)) {
allIds.remove(id);
}
}
for (String id : allIds.keySet()) {
add(id);
}
}
}