/*
* #%L
* org.gitools.ui.app
* %%
* Copyright (C) 2013 - 2014 Universitat Pompeu Fabra - Biomedical Genomics group
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-3.0.html>.
* #L%
*/
package org.gitools.ui.app.actions.analysis;
import com.google.common.base.Strings;
import org.gitools.analysis.Analysis;
import org.gitools.analysis.AnalysisProcessor;
import org.gitools.api.ApplicationContext;
import org.gitools.api.analysis.IProgressMonitor;
import org.gitools.heatmap.Heatmap;
import org.gitools.ui.core.Application;
import org.gitools.ui.core.actions.HeatmapAction;
import org.gitools.ui.core.components.editor.AbstractEditor;
import org.gitools.ui.core.components.wizard.AnalysisWizard;
import org.gitools.ui.platform.progress.JobRunnable;
import org.gitools.ui.platform.progress.JobThread;
import org.gitools.ui.platform.wizard.WizardDialog;
import javax.swing.*;
import java.awt.event.ActionEvent;
public abstract class AbstractAnalysisAction<A extends Analysis> extends HeatmapAction {
public AbstractAnalysisAction(String name, int mnemonic) {
super(name);
setMnemonic(mnemonic);
}
@Override
public void actionPerformed(ActionEvent e) {
AnalysisWizard<? extends A> wizard = newWizard(getHeatmap());
WizardDialog wizDlg = new WizardDialog(Application.get(), wizard);
wizDlg.open();
if (wizDlg.isCancelled()) {
return;
}
final A analysis = wizard.createAnalysis();
final AnalysisProcessor cmd = newProcessor(analysis);
JobThread.execute(Application.get(), new JobRunnable() {
@Override
public void run(IProgressMonitor monitor) {
cmd.run(monitor);
if (monitor.isCancelled()) {
return;
}
SwingUtilities.invokeLater(new Runnable() {
@Override
public void run() {
AbstractEditor editor = (AbstractEditor) ApplicationContext.getEditorManger().createEditor(analysis);
String title = analysis.getTitle();
if (Strings.isNullOrEmpty(title)) {
title = editor.getClass().getSimpleName().replace("Editor", "").toLowerCase();
}
editor.setName(title);
Application.get().getEditorsPanel().addEditor(editor);
Application.get().refresh();
}
});
}
});
}
protected abstract AnalysisWizard<? extends A> newWizard(Heatmap heatmap);
protected abstract AnalysisProcessor newProcessor(A analysis);
}