/* * #%L * org.gitools.ui.app * %% * Copyright (C) 2013 - 2014 Universitat Pompeu Fabra - Biomedical Genomics group * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public * License along with this program. If not, see * <http://www.gnu.org/licenses/gpl-3.0.html>. * #L% */ package org.gitools.ui.app.actions.analysis; import com.google.common.base.Strings; import org.gitools.analysis.Analysis; import org.gitools.analysis.AnalysisProcessor; import org.gitools.api.ApplicationContext; import org.gitools.api.analysis.IProgressMonitor; import org.gitools.heatmap.Heatmap; import org.gitools.ui.core.Application; import org.gitools.ui.core.actions.HeatmapAction; import org.gitools.ui.core.components.editor.AbstractEditor; import org.gitools.ui.core.components.wizard.AnalysisWizard; import org.gitools.ui.platform.progress.JobRunnable; import org.gitools.ui.platform.progress.JobThread; import org.gitools.ui.platform.wizard.WizardDialog; import javax.swing.*; import java.awt.event.ActionEvent; public abstract class AbstractAnalysisAction<A extends Analysis> extends HeatmapAction { public AbstractAnalysisAction(String name, int mnemonic) { super(name); setMnemonic(mnemonic); } @Override public void actionPerformed(ActionEvent e) { AnalysisWizard<? extends A> wizard = newWizard(getHeatmap()); WizardDialog wizDlg = new WizardDialog(Application.get(), wizard); wizDlg.open(); if (wizDlg.isCancelled()) { return; } final A analysis = wizard.createAnalysis(); final AnalysisProcessor cmd = newProcessor(analysis); JobThread.execute(Application.get(), new JobRunnable() { @Override public void run(IProgressMonitor monitor) { cmd.run(monitor); if (monitor.isCancelled()) { return; } SwingUtilities.invokeLater(new Runnable() { @Override public void run() { AbstractEditor editor = (AbstractEditor) ApplicationContext.getEditorManger().createEditor(analysis); String title = analysis.getTitle(); if (Strings.isNullOrEmpty(title)) { title = editor.getClass().getSimpleName().replace("Editor", "").toLowerCase(); } editor.setName(title); Application.get().getEditorsPanel().addEditor(editor); Application.get().refresh(); } }); } }); } protected abstract AnalysisWizard<? extends A> newWizard(Heatmap heatmap); protected abstract AnalysisProcessor newProcessor(A analysis); }