/* * #%L * org.gitools.heatmap * %% * Copyright (C) 2013 - 2014 Universitat Pompeu Fabra - Biomedical Genomics group * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public * License along with this program. If not, see * <http://www.gnu.org/licenses/gpl-3.0.html>. * #L% */ package org.gitools.plugins.mutex; import org.gitools.api.plugins.PluginAccess; import org.gitools.heatmap.Bookmark; import org.gitools.heatmap.Heatmap; import org.gitools.heatmap.plugins.AbstractPlugin; import org.gitools.plugins.mutex.ui.MutualExclusiveBox; import org.gitools.ui.core.components.boxes.Box; import org.gitools.ui.core.plugins.IActionPlugin; import org.gitools.ui.core.plugins.IBoxPlugin; import javax.enterprise.context.ApplicationScoped; import javax.xml.bind.annotation.XmlAccessType; import javax.xml.bind.annotation.XmlAccessorType; import javax.xml.bind.annotation.XmlRootElement; import javax.xml.bind.annotation.XmlTransient; import java.util.*; @ApplicationScoped @XmlRootElement(name = "mutual-exclusive") @XmlAccessorType(XmlAccessType.FIELD) public class MutualExclusivePlugin extends AbstractPlugin implements IBoxPlugin, IActionPlugin { @XmlTransient public static final String PROPERTY_NAME = "mutex"; @XmlTransient public static String ID = "mutual-exclusive"; private List<MutualExclusiveBookmark> bookmarks; @XmlTransient private Map<String, Integer> keysMap; public MutualExclusivePlugin() { super(ID); bookmarks = new ArrayList<>(); keysMap = new HashMap<>(); updateKeys(); } @Override public String getVersion() { return "1.0.0"; } @Override public String getOldestCompatibleVersion() { return "0.0.99"; } @Override public PluginAccess getPluginAccess() { return IBoxPlugin.ACCESSES .merge(IActionPlugin.ACCESSES); } public void add(MutualExclusiveBookmark bookmark) { bookmarks.add(bookmark); updateKeys(); } private void updateKeys() { keysMap.clear(); for (Bookmark b : bookmarks) keysMap.put(b.getName(), bookmarks.indexOf(b)); firePropertyChange(PROPERTY_NAME, null, bookmarks); } public String[] getKeys() { if (keysMap.size() != bookmarks.size()) { updateKeys(); } String[] keys = keysMap.keySet().toArray(new String[keysMap.size()]); Arrays.sort(keys); return keys; } public MutualExclusiveBookmark getBookmark(String name) { return bookmarks.get(keysMap.get(name)); } public void remove(String name) { Bookmark b = getBookmark(name); bookmarks.remove(b); updateKeys(); } public boolean isNotEmpty() { return bookmarks.size() > 0; } @Override public Box[] getBoxes(Heatmap heatmap) { return new Box[]{new MutualExclusiveBox("Mutual exclusion results", heatmap, this)}; } public void forceUpdate() { updateKeys(); } public boolean uniqueName(String name) { for (String s : getKeys()) { if (name.toLowerCase().equals(s.toLowerCase())) { return false; } } return true; } }