/* * #%L * gitools-core * %% * Copyright (C) 2013 Universitat Pompeu Fabra - Biomedical Genomics group * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public * License along with this program. If not, see * <http://www.gnu.org/licenses/gpl-3.0.html>. * #L% */ package org.gitools.matrix.filter; import com.google.common.base.Function; import org.gitools.api.matrix.IAnnotations; import org.gitools.utils.textpattern.TextPattern; public class PatternFunction implements Function<String, String>, TextPattern.VariableValueResolver { private IAnnotations annotations; private TextPattern pattern; private ThreadLocal<String> currentIdentifier; public PatternFunction(String pattern, IAnnotations annotations) { this.pattern = (pattern == null ? null : new TextPattern(pattern)); this.annotations = annotations; this.currentIdentifier = new ThreadLocal<>(); } @Override public String resolveValue(String variableName) { if (variableName.equalsIgnoreCase("id")) { return currentIdentifier.get(); } String annotation = null; if (annotations != null) { annotation = annotations.getAnnotation(currentIdentifier.get(), variableName); } if (annotation == null) { return ""; } return annotation; } @Override public String apply(String input) { if (input == null) { return null; } if (pattern == null) { return input; } currentIdentifier.set(input); return pattern.generate(this); } public TextPattern getPattern() { return pattern; } }