/* * #%L * gitools-core * %% * Copyright (C) 2013 Universitat Pompeu Fabra - Biomedical Genomics group * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public * License along with this program. If not, see * <http://www.gnu.org/licenses/gpl-3.0.html>. * #L% */ package org.gitools.heatmap.decorator.impl; import org.gitools.api.matrix.IMatrix; import org.gitools.api.matrix.IMatrixLayer; import org.gitools.api.matrix.IMatrixPosition; import org.gitools.heatmap.decorator.Decoration; import org.gitools.heatmap.decorator.Decorator; import org.gitools.utils.colorscale.ColorScalePoint; import org.gitools.utils.colorscale.impl.CategoricalColorScale; import org.gitools.utils.formatter.ITextFormatter; import org.gitools.utils.xml.adapter.ColorXmlAdapter; import javax.xml.bind.annotation.*; import javax.xml.bind.annotation.adapters.XmlJavaTypeAdapter; import java.awt.*; import java.util.ArrayList; import java.util.List; @XmlAccessorType(XmlAccessType.NONE) public class CategoricalDecorator extends Decorator<CategoricalColorScale> { public static final String PROPERTY_COLOR = "color"; public static final String PROPERTY_EMPTY_COLOR = "emptyColor"; public static final String PROPERTY_CATEGORIES = "categories"; private CategoricalColorScale scale; @XmlTransient private NonEventToNullFunction<CategoricalColorScale> categoricalEvents; public CategoricalDecorator() { super(); this.scale = new CategoricalColorScale(); } public CategoricalColorScale getScale() { return scale; } public void setScale(CategoricalColorScale scale) { this.scale = scale; } public final void setColor(double value, Color valueColor) { if (getScale().getColorScalePoint(value) != null) { Color old = getScale().getColorScalePoint(value).getColor(); getScale().getColorScalePoint(value).setColor(valueColor); firePropertyChange(PROPERTY_COLOR, old, valueColor); } } @XmlElement(name = "empty-color") @XmlJavaTypeAdapter(ColorXmlAdapter.class) public Color getEmptyColor() { return getScale().getEmptyColor(); } public void setEmptyColor(Color color) { Color old = getScale().getEmptyColor(); getScale().setEmptyColor(color); firePropertyChange(PROPERTY_EMPTY_COLOR, old, color); } @Override public void decorate(Decoration decoration, ITextFormatter textFormatter, IMatrix matrix, IMatrixLayer layer, String... identifiers) { Object value = matrix.get(layer, identifiers); double v = toDouble(value); if (Double.isNaN(v)) { decoration.setBgColor(getScale().getEmptyColor()); return; } final Color color = getScale().valueColor(v); decoration.setBgColor(color); if (isShowValue()) { if (scale.getColorScalePoint(v) == null) return; String category = scale.getColorScalePoint(v).getName(); decoration.setValue( category.equals("") ? textFormatter.format(value) : category ); } } @XmlElementWrapper(name = "categories") @XmlElement(name = "category") public ColorScalePoint[] getCategories() { return getScale().getPointObjects(); } public void setCategories(ColorScalePoint... newScalePoints) { ColorScalePoint[] old = getScale().getPointObjects(); getScale().setPointObjects(newScalePoints); firePropertyChange(PROPERTY_CATEGORIES, old, newScalePoints); } @Override public NonEventToNullFunction getDefaultEventFunction() { if (categoricalEvents == null) { categoricalEvents = new NonEventToNullFunction<CategoricalColorScale>(scale, "Categorical Events") { @Override public Double apply(Double value, IMatrixPosition position) { this.position = position; if (value == null) { return null; } for (double pointValue : getColorScale().getPoints()) { if (pointValue == value) { return value; } } return null; } @Override public String getDescription() { StringBuilder sb = new StringBuilder("All values represented in the categorical scale are events: "); boolean first = true; for (ColorScalePoint p : getCategories()) { if (first) { first = false; } else { sb.append(", "); } sb.append(p.getName()); } return sb.toString(); } }; } return categoricalEvents; } @Override public List<NonEventToNullFunction> getEventFunctionAlternatives() { List<NonEventToNullFunction> list = new ArrayList<>(); list.add(getDefaultEventFunction()); list.addAll(super.getEventFunctionAlternatives()); return list; } }