/*
* #%L
* gitools-core
* %%
* Copyright (C) 2013 Universitat Pompeu Fabra - Biomedical Genomics group
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-3.0.html>.
* #L%
*/
package org.gitools.api.matrix;
import org.gitools.api.resource.IResource;
public interface IMatrix extends IResource {
MatrixDimensionKey[] getDimensionKeys();
IMatrixDimension getDimension(MatrixDimensionKey dimension);
IMatrixLayers<? extends IMatrixLayer> getLayers();
<T> T get(IMatrixLayer<T> layer, IMatrixPosition position);
<T> T get(IMatrixLayer<T> layer, String... identifiers);
<T> void set(IMatrixLayer<T> layer, T value, IMatrixPosition position);
<T> void set(IMatrixLayer<T> layer, T value, String... identifiers);
IMatrixPosition newPosition();
IMatrix subset(IMatrixDimension... dimensionSubsets);
/**
* This method is called when the matrix is not in use.
* <p/>
* It's a good practice to free all the caching memory usage.
* @param topLayer
*/
void detach(IMatrixLayer topLayer);
<T> void setMetadata(IKey<T> key, T value);
<T> T getMetadata(IKey<T> key);
IMatrixDimension getRows();
IMatrixDimension getColumns();
}