package org.akaza.openclinica.web.crfdata;
import org.akaza.openclinica.bean.core.DataEntryStage;
import org.akaza.openclinica.bean.core.SubjectEventStatus;
import org.akaza.openclinica.bean.managestudy.StudyBean;
import org.akaza.openclinica.bean.managestudy.StudyEventBean;
import org.akaza.openclinica.bean.managestudy.StudyEventDefinitionBean;
import org.akaza.openclinica.bean.managestudy.StudySubjectBean;
import org.akaza.openclinica.bean.submit.CRFVersionBean;
import org.akaza.openclinica.bean.submit.EventCRFBean;
import org.akaza.openclinica.bean.submit.crfdata.*;
import org.akaza.openclinica.dao.managestudy.StudyDAO;
import org.akaza.openclinica.dao.managestudy.StudyEventDAO;
import org.akaza.openclinica.dao.managestudy.StudyEventDefinitionDAO;
import org.akaza.openclinica.dao.managestudy.StudySubjectDAO;
import org.akaza.openclinica.dao.submit.CRFVersionDAO;
import org.akaza.openclinica.dao.submit.EventCRFDAO;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import javax.sql.DataSource;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
public class ImportCRFInfoContainer {
protected final Logger logger = LoggerFactory.getLogger(getClass().getName());
// (Subject) (Event) (Form)
private Map<String, Map<String, Map<String, String>>> importCRFMap;
private List<ImportCRFInfo> importCRFList;
/*
* Purpose: Iterates over ODM to populate 2 objects: 1. importCRFList: A List of EventCRFs and information on how to
* process them. 2. importCRFMap: A Map multi-layer map of Subject/Event/Form only populated when the subsequent
* EventCRF passes the UpsertOn rules.
*/
public ImportCRFInfoContainer(ODMContainer odmContainer, DataSource ds) {
importCRFList = new ArrayList<ImportCRFInfo>();
ArrayList<EventCRFBean> eventCRFBeans = new ArrayList<EventCRFBean>();
ArrayList<Integer> eventCRFBeanIds = new ArrayList<Integer>();
EventCRFDAO eventCrfDAO = new EventCRFDAO(ds);
StudySubjectDAO studySubjectDAO = new StudySubjectDAO(ds);
StudyEventDefinitionDAO studyEventDefinitionDAO = new StudyEventDefinitionDAO(ds);
StudyDAO studyDAO = new StudyDAO(ds);
StudyEventDAO studyEventDAO = new StudyEventDAO(ds);
UpsertOnBean upsert = odmContainer.getCrfDataPostImportContainer().getUpsertOn();
// If Upsert bean is not present, create one with default settings
if (upsert == null)
upsert = new UpsertOnBean();
String studyOID = odmContainer.getCrfDataPostImportContainer().getStudyOID();
StudyBean studyBean = studyDAO.findByOid(studyOID);
ArrayList<SubjectDataBean> subjectDataBeans = odmContainer.getCrfDataPostImportContainer().getSubjectData();
Map<String, Map<String, Map<String, String>>> subjectMap = new HashMap<String, Map<String, Map<String, String>>>();
for (SubjectDataBean subjectDataBean : subjectDataBeans) {
ArrayList<StudyEventDataBean> studyEventDataBeans = subjectDataBean.getStudyEventData();
StudySubjectBean studySubjectBean = studySubjectDAO.findByOidAndStudy(subjectDataBean.getSubjectOID(), studyBean.getId());
Map<String, Map<String, String>> eventMap = new HashMap<String, Map<String, String>>();
for (StudyEventDataBean studyEventDataBean : studyEventDataBeans) {
ArrayList<FormDataBean> formDataBeans = studyEventDataBean.getFormData();
String sampleOrdinal = studyEventDataBean.getStudyEventRepeatKey() == null ? "1" : studyEventDataBean.getStudyEventRepeatKey();
StudyEventDefinitionBean studyEventDefinitionBean = studyEventDefinitionDAO.findByOidAndStudy(studyEventDataBean.getStudyEventOID(),
studyBean.getId(), studyBean.getParentStudyId());
logger.info("find all by def and subject " + studyEventDefinitionBean.getName() + " study subject " + studySubjectBean.getName());
StudyEventBean studyEventBean = (StudyEventBean) studyEventDAO.findByStudySubjectIdAndDefinitionIdAndOrdinal(studySubjectBean.getId(),
studyEventDefinitionBean.getId(), Integer.parseInt(sampleOrdinal));
// @pgawade 16-March-2011 Do not allow the data import
// if event status is one of the - stopped, signed,
// locked
Map<String, String> formMap = new HashMap<String, String>();
for (FormDataBean formDataBean : formDataBeans) {
CRFVersionDAO crfVersionDAO = new CRFVersionDAO(ds);
ArrayList<CRFVersionBean> crfVersionBeans = crfVersionDAO.findAllByOid(formDataBean.getFormOID());
for (CRFVersionBean crfVersionBean : crfVersionBeans) {
ArrayList<EventCRFBean> eventCrfBeans = eventCrfDAO.findByEventSubjectVersion(studyEventBean, studySubjectBean, crfVersionBean);
// what if we have begun with creating a study
// event, but haven't entered data yet? this would
// have us with a study event, but no corresponding
// event crf, yet.
if (eventCrfBeans.isEmpty()) {
logger.debug(" found no event crfs from Study Event id " + studyEventBean.getId() + ", location " + studyEventBean.getLocation());
ImportCRFInfo importCrfInfo = new ImportCRFInfo(studyOID, subjectDataBean.getSubjectOID(), studyEventDataBean.getStudyEventOID(),
formDataBean.getFormOID());
importCrfInfo.setPreImportStage(DataEntryStage.UNCOMPLETED);
String crfStatus = formDataBean.getEventCRFStatus();
if (crfStatus != null && crfStatus.equals(DataEntryStage.INITIAL_DATA_ENTRY.getName()))
importCrfInfo.setPostImportStage(DataEntryStage.INITIAL_DATA_ENTRY);
if ((studyEventBean.getSubjectEventStatus().equals(SubjectEventStatus.SCHEDULED)
|| studyEventBean.getSubjectEventStatus().equals(SubjectEventStatus.DATA_ENTRY_STARTED) || studyEventBean
.getSubjectEventStatus().equals(SubjectEventStatus.COMPLETED))) {
if (!upsert.isNotStarted()) {
importCrfInfo.setProcessImport(false);
importCrfInfo.setEventCRFID(null);
}
}
importCRFList.add(importCrfInfo);
if (importCrfInfo.isProcessImport())
formMap.put(formDataBean.getFormOID(), "true");
}
for (EventCRFBean ecb : eventCrfBeans) {
ImportCRFInfo importCrfInfo = new ImportCRFInfo(studyOID, subjectDataBean.getSubjectOID(), studyEventDataBean.getStudyEventOID(),
formDataBean.getFormOID());
importCrfInfo.setPreImportStage(ecb.getStage());
String crfStatus = formDataBean.getEventCRFStatus();
if (crfStatus != null && crfStatus.equals(DataEntryStage.INITIAL_DATA_ENTRY.getName()))
importCrfInfo.setPostImportStage(DataEntryStage.INITIAL_DATA_ENTRY);
importCrfInfo.setEventCRFID(new Integer(ecb.getId()));
if (!(ecb.getStage().equals(DataEntryStage.INITIAL_DATA_ENTRY) && upsert.isDataEntryStarted())
&& !(ecb.getStage().equals(DataEntryStage.DOUBLE_DATA_ENTRY_COMPLETE) && upsert.isDataEntryComplete()))
importCrfInfo.setProcessImport(false);
importCRFList.add(importCrfInfo);
if (importCrfInfo.isProcessImport())
formMap.put(formDataBean.getFormOID(), "true");
}
}
} // formdata loop
if (formMap.size() > 0)
eventMap.put(studyEventDataBean.getStudyEventOID(), formMap);
} // study event loop
if (eventMap.size() > 0)
subjectMap.put(subjectDataBean.getSubjectOID(), eventMap);
} // subject data loop
importCRFMap = subjectMap;
}
public int getCountSkippedEventCrfs() {
int countSkippedCrfs = 0;
for (ImportCRFInfo importCrf : importCRFList) {
if (!importCrf.isProcessImport())
countSkippedCrfs++;
}
return countSkippedCrfs;
}
public List<ImportCRFInfo> getImportCRFList() {
return importCRFList;
}
public void setImportCRFList(List<ImportCRFInfo> importCRFList) {
this.importCRFList = importCRFList;
}
public Map<String, Map<String, Map<String, String>>> getImportCRFMap() {
return importCRFMap;
}
public void setImportCRFMap(Map<String, Map<String, Map<String, String>>> importCRFMap) {
this.importCRFMap = importCRFMap;
}
}