package org.akaza.openclinica.control.managestudy;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.Calendar;
import java.util.Date;
import java.util.HashMap;
import java.util.HashSet;
import java.util.Map;
import javax.sql.DataSource;
import org.akaza.openclinica.bean.admin.AuditEventBean;
import org.akaza.openclinica.bean.admin.CRFBean;
import org.akaza.openclinica.bean.admin.StudyEventAuditBean;
import org.akaza.openclinica.bean.core.DataEntryStage;
import org.akaza.openclinica.bean.core.Role;
import org.akaza.openclinica.bean.core.Status;
import org.akaza.openclinica.bean.core.SubjectEventStatus;
import org.akaza.openclinica.bean.login.StudyUserRoleBean;
import org.akaza.openclinica.bean.login.UserAccountBean;
import org.akaza.openclinica.bean.managestudy.DisplayEventDefinitionCRFBean;
import org.akaza.openclinica.bean.managestudy.DisplayStudyEventBean;
import org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean;
import org.akaza.openclinica.bean.managestudy.StudyBean;
import org.akaza.openclinica.bean.managestudy.StudyEventBean;
import org.akaza.openclinica.bean.managestudy.StudyEventDefinitionBean;
import org.akaza.openclinica.bean.managestudy.StudySubjectBean;
import org.akaza.openclinica.bean.submit.CRFVersionBean;
import org.akaza.openclinica.bean.submit.DisplayEventCRFBean;
import org.akaza.openclinica.bean.submit.EventCRFBean;
import org.akaza.openclinica.bean.submit.SubjectBean;
import org.akaza.openclinica.control.SpringServletAccess;
import org.akaza.openclinica.control.core.SecureController;
import org.akaza.openclinica.control.form.FormProcessor;
import org.akaza.openclinica.control.submit.CreateNewStudyEventServlet;
import org.akaza.openclinica.core.SecurityManager;
import org.akaza.openclinica.core.form.StringUtil;
import org.akaza.openclinica.dao.admin.AuditEventDAO;
import org.akaza.openclinica.dao.admin.CRFDAO;
import org.akaza.openclinica.dao.login.UserAccountDAO;
import org.akaza.openclinica.dao.managestudy.DiscrepancyNoteDAO;
import org.akaza.openclinica.dao.managestudy.EventDefinitionCRFDAO;
import org.akaza.openclinica.dao.managestudy.StudyDAO;
import org.akaza.openclinica.dao.managestudy.StudyEventDAO;
import org.akaza.openclinica.dao.managestudy.StudyEventDefinitionDAO;
import org.akaza.openclinica.dao.managestudy.StudySubjectDAO;
import org.akaza.openclinica.dao.service.StudyParameterValueDAO;
import org.akaza.openclinica.dao.submit.CRFVersionDAO;
import org.akaza.openclinica.dao.submit.EventCRFDAO;
import org.akaza.openclinica.dao.submit.ItemDataDAO;
import org.akaza.openclinica.dao.submit.SubjectDAO;
import org.akaza.openclinica.dao.submit.SubjectGroupMapDAO;
import org.akaza.openclinica.service.DiscrepancyNoteUtil;
import org.akaza.openclinica.view.Page;
import org.akaza.openclinica.web.InsufficientPermissionException;
import org.akaza.openclinica.web.bean.DisplayStudyEventRow;
import org.akaza.openclinica.web.bean.EntityBeanTable;
/**
* Created by IntelliJ IDEA. User: bads Date: Jun 10, 2008 Time: 5:28:46 PM To
* change this template use File | Settings | File Templates.
*/
public class SignStudySubjectServlet extends SecureController {
/**
* Checks whether the user has the right permission to proceed function
*/
@Override
public void mayProceed() throws InsufficientPermissionException {
checkStudyLocked(Page.LIST_STUDY_SUBJECTS, respage.getString("current_study_locked"));
mayAccess();
if (ub.isSysAdmin()) {
return;
}
if (currentRole.getRole().equals(Role.STUDYDIRECTOR) || currentRole.getRole().equals(Role.COORDINATOR)
|| currentRole.getRole().equals(Role.INVESTIGATOR)) {
return;
}
addPageMessage(respage.getString("no_have_correct_privilege_current_study") + " " + respage.getString("change_study_contact_sysadmin"));
throw new InsufficientPermissionException(Page.MENU_SERVLET, resexception.getString("not_study_director"), "1");
}
public static ArrayList getDisplayStudyEventsForStudySubject(StudyBean study, StudySubjectBean studySub, DataSource ds, UserAccountBean ub,
StudyUserRoleBean currentRole) {
StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(ds);
StudyEventDAO sedao = new StudyEventDAO(ds);
EventCRFDAO ecdao = new EventCRFDAO(ds);
EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(ds);
StudySubjectDAO ssdao = new StudySubjectDAO(ds);
ArrayList events = sedao.findAllByStudySubject(studySub);
ArrayList displayEvents = new ArrayList();
for (int i = 0; i < events.size(); i++) {
StudyEventBean event = (StudyEventBean) events.get(i);
StudyEventDefinitionBean sed = (StudyEventDefinitionBean) seddao.findByPK(event.getStudyEventDefinitionId());
event.setStudyEventDefinition(sed);
// find all active crfs in the definition
ArrayList eventDefinitionCRFs = (ArrayList) edcdao.findAllActiveByEventDefinitionId(study, sed.getId());
ArrayList eventCRFs = ecdao.findAllByStudyEvent(event);
// construct info needed on view study event page
DisplayStudyEventBean de = new DisplayStudyEventBean();
de.setStudyEvent(event);
de.setDisplayEventCRFs(getDisplayEventCRFs(study, ds, eventCRFs, ub, currentRole, event.getSubjectEventStatus()));
ArrayList al = getUncompletedCRFs(ds, eventDefinitionCRFs, eventCRFs, event.getSubjectEventStatus());
populateUncompletedCRFsWithCRFAndVersions(ds, al);
de.setUncompletedCRFs(al);
StudySubjectBean studySubject = (StudySubjectBean) ssdao.findByPK(event.getStudySubjectId());
de.setMaximumSampleOrdinal(sedao.getMaxSampleOrdinal(sed, studySubject));
displayEvents.add(de);
// event.setEventCRFs(createAllEventCRFs(eventCRFs,
// eventDefinitionCRFs));
}
return displayEvents;
}
public static boolean permitSign(StudySubjectBean studySub, DataSource ds) {
boolean sign = true;
StudyEventDAO sedao = new StudyEventDAO(ds);
EventCRFDAO ecdao = new EventCRFDAO(ds);
EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(ds);
StudyDAO sdao = new StudyDAO(ds);
StudyBean studyBean = (StudyBean) sdao.findByPK(studySub.getStudyId());
// DiscrepancyNoteDAO discDao = new DiscrepancyNoteDAO(ds);
ArrayList studyEvents = sedao.findAllByStudySubject(studySub);
for (int l = 0; l < studyEvents.size(); l++) {
StudyEventBean studyEvent = (StudyEventBean) studyEvents.get(l);
ArrayList eventCrfs = ecdao.findAllByStudyEvent(studyEvent);
for (int i = 0; i < eventCrfs.size(); i++) {
EventCRFBean ecrf = (EventCRFBean) eventCrfs.get(i);
// ArrayList discList =
// discDao.findAllItemNotesByEventCRF(ecrf.getId());
// for (int j = 0; j < discList.size(); j++) {
// DiscrepancyNoteBean discBean = (DiscrepancyNoteBean)
// discList.get(j);
// if
//(discBean.getResStatus().equals(org.akaza.openclinica.bean.core
// .ResolutionStatus.OPEN)
// ||
//discBean.getResStatus().equals(org.akaza.openclinica.bean.core
// .ResolutionStatus.UPDATED))
// {
// sign = false;
// break;
// }
// }
EventDefinitionCRFBean edcBean = edcdao.findByStudyEventIdAndCRFVersionId(studyBean, studyEvent.getId(), ecrf.getCRFVersionId());
if (ecrf.getStage().equals(DataEntryStage.INITIAL_DATA_ENTRY) || ecrf.getStage().equals(DataEntryStage.INITIAL_DATA_ENTRY_COMPLETE)
&& edcBean.isDoubleEntry() == true) {
sign = false;
break;
}
}
}
return sign;
}
public static boolean signSubjectEvents(StudySubjectBean studySub, DataSource ds, UserAccountBean ub) {
boolean updated = true;
// StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(ds);
StudyEventDAO sedao = new StudyEventDAO(ds);
EventCRFDAO ecdao = new EventCRFDAO(ds);
EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(ds);
// StudySubjectDAO ssdao = new StudySubjectDAO(ds);
DiscrepancyNoteDAO discDao = new DiscrepancyNoteDAO(ds);
ArrayList studyEvents = sedao.findAllByStudySubject(studySub);
for (int l = 0; l < studyEvents.size(); l++) {
try {
StudyEventBean studyEvent = (StudyEventBean) studyEvents.get(l);
studyEvent.setUpdater(ub);
studyEvent.setUpdatedDate(new Date());
studyEvent.setSubjectEventStatus(SubjectEventStatus.SIGNED);
sedao.update(studyEvent);
} catch (Exception ex) {
updated = false;
}
}
return updated;
}
@Override
public void processRequest() throws Exception {
SubjectDAO sdao = new SubjectDAO(sm.getDataSource());
StudySubjectDAO subdao = new StudySubjectDAO(sm.getDataSource());
FormProcessor fp = new FormProcessor(request);
String action = fp.getString("action");
int studySubId = fp.getInt("id", true);// studySubjectId
String module = fp.getString(MODULE);
request.setAttribute(MODULE, module);
if (studySubId == 0) {
addPageMessage(respage.getString("please_choose_a_subject_to_view"));
forwardPage(Page.LIST_STUDY_SUBJECTS);
return;
}
StudySubjectBean studySub = (StudySubjectBean) subdao.findByPK(studySubId);
if (!permitSign(studySub, sm.getDataSource())) {
addPageMessage(respage.getString("subject_event_cannot_signed"));
// forwardPage(Page.SUBMIT_DATA_SERVLET);
forwardPage(Page.LIST_STUDY_SUBJECTS_SERVLET);
// >> changed tbh, 06/2009
return;
}
if (action.equalsIgnoreCase("confirm")) {
String username = request.getParameter("j_user");
String password = request.getParameter("j_pass");
SecurityManager securityManager = ((SecurityManager) SpringServletAccess.getApplicationContext(context).getBean("securityManager"));
// String encodedUserPass =
// org.akaza.openclinica.core.SecurityManager
// .getInstance().encrytPassword(password);
UserAccountBean ub = (UserAccountBean) session.getAttribute("userBean");
if (securityManager.verifyPassword(password, getUserDetails()) && ub.getName().equals(username)) {
if (signSubjectEvents(studySub, sm.getDataSource(), ub)) {
// Making the StudySubject signed as all the events have
// become signed.
studySub.setStatus(Status.SIGNED);
studySub.setUpdater(ub);
subdao.update(studySub);
addPageMessage(respage.getString("subject_event_signed"));
// forwardPage(Page.SUBMIT_DATA_SERVLET);
forwardPage(Page.LIST_STUDY_SUBJECTS_SERVLET);
// >> changed tbh, 06/2009
return;
} else {
addPageMessage(respage.getString("errors_in_submission_see_below"));
forwardPage(Page.LIST_STUDY_SUBJECTS);
return;
}
} else {
request.setAttribute("id", new Integer(studySubId).toString());
addPageMessage(restext.getString("password_match"));
forwardPage(Page.LIST_STUDY_SUBJECTS);
return;
}
}
request.setAttribute("studySub", studySub);
int studyId = studySub.getStudyId();
int subjectId = studySub.getSubjectId();
SubjectBean subject = (SubjectBean) sdao.findByPK(subjectId);
if (currentStudy.getStudyParameterConfig().getCollectDob().equals("2")) {
Date dob = subject.getDateOfBirth();
if (dob != null) {
Calendar cal = Calendar.getInstance();
cal.setTime(dob);
int year = cal.get(Calendar.YEAR);
request.setAttribute("yearOfBirth", new Integer(year));
} else {
request.setAttribute("yearOfBirth", "");
}
}
request.setAttribute("subject", subject);
StudyDAO studydao = new StudyDAO(sm.getDataSource());
StudyBean study = (StudyBean) studydao.findByPK(studyId);
StudyParameterValueDAO spvdao = new StudyParameterValueDAO(sm.getDataSource());
study.getStudyParameterConfig().setCollectDob(spvdao.findByHandleAndStudy(studyId, "collectDob").getValue());
//request.setAttribute("study", study);
if (study.getParentStudyId() > 0) {// this is a site,find parent
StudyBean parentStudy = (StudyBean) studydao.findByPK(study.getParentStudyId());
request.setAttribute("parentStudy", parentStudy);
} else {
request.setAttribute("parentStudy", new StudyBean());
}
ArrayList children = (ArrayList) sdao.findAllChildrenByPK(subjectId);
request.setAttribute("children", children);
// find study events
StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(sm.getDataSource());
EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
// find all eventcrfs for each event
EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
ArrayList<DisplayStudyEventBean> displayEvents = getDisplayStudyEventsForStudySubject(study, studySub, sm.getDataSource(), ub, currentRole);
DiscrepancyNoteUtil discNoteUtil = new DiscrepancyNoteUtil();
// Don't filter for now; disc note beans are returned with eventCRFId
// set
discNoteUtil.injectParentDiscNotesIntoDisplayStudyEvents(displayEvents, new HashSet(), sm.getDataSource(), 0);
// All the displaystudyevents for one subject
request.setAttribute("displayStudyEvents", displayEvents);
// Set up a Map for the JSP view, mapping the eventCRFId to another Map:
// the
// inner Map maps the resolution status name to the number of notes for
// that
// eventCRF id, as in New --> 2
Map discNoteByEventCRFid = discNoteUtil.createDiscNoteMapByEventCRF(displayEvents);
request.setAttribute("discNoteByEventCRFid", discNoteByEventCRFid);
EntityBeanTable table = fp.getEntityBeanTable();
table.setSortingIfNotExplicitlySet(1, false);// sort by start date,
// desc
ArrayList allEventRows = DisplayStudyEventRow.generateRowsFromBeans(displayEvents);
String[] columns =
{ resword.getString("event") + " (" + resword.getString("occurrence_number") + ")", resword.getString("start_date1"),
resword.getString("location"), resword.getString("status"), resword.getString("actions"), resword.getString("CRFs_atrib") };
table.setColumns(new ArrayList(Arrays.asList(columns)));
table.hideColumnLink(4);
table.hideColumnLink(5);
if (!"removed".equalsIgnoreCase(studySub.getStatus().getName()) && !"auto-removed".equalsIgnoreCase(studySub.getStatus().getName())) {
table.addLink(resword.getString("add_new_event"), "CreateNewStudyEvent?" + CreateNewStudyEventServlet.INPUT_STUDY_SUBJECT_ID_FROM_VIEWSUBJECT + "="
+ studySub.getId());
}
HashMap args = new HashMap();
args.put("id", new Integer(studySubId).toString());
table.setQuery("ViewStudySubject", args);
table.setRows(allEventRows);
table.computeDisplay();
request.setAttribute("table", table);
SubjectGroupMapDAO sgmdao = new SubjectGroupMapDAO(sm.getDataSource());
ArrayList groupMaps = (ArrayList) sgmdao.findAllByStudySubject(studySubId);
request.setAttribute("groups", groupMaps);
AuditEventDAO aedao = new AuditEventDAO(sm.getDataSource());
ArrayList logs = aedao.findEventStatusLogByStudySubject(studySubId);
UserAccountDAO udao = new UserAccountDAO(sm.getDataSource());
ArrayList eventLogs = new ArrayList();
for (int i = 0; i < logs.size(); i++) {
AuditEventBean avb = (AuditEventBean) logs.get(i);
StudyEventAuditBean sea = new StudyEventAuditBean();
sea.setAuditEvent(avb);
StudyEventBean se = (StudyEventBean) sedao.findByPK(avb.getEntityId());
StudyEventDefinitionBean sed = (StudyEventDefinitionBean) seddao.findByPK(se.getStudyEventDefinitionId());
sea.setDefinition(sed);
String old = avb.getOldValue().trim();
try {
if (!StringUtil.isBlank(old)) {
SubjectEventStatus oldStatus = SubjectEventStatus.get(new Integer(old).intValue());
sea.setOldSubjectEventStatus(oldStatus);
}
String newValue = avb.getNewValue().trim();
if (!StringUtil.isBlank(newValue)) {
SubjectEventStatus newStatus = SubjectEventStatus.get(new Integer(newValue).intValue());
sea.setNewSubjectEventStatus(newStatus);
}
} catch (NumberFormatException e) {
// TODO Auto-generated catch block
e.printStackTrace();
// logger.warning("^^^ caught NFE");
}
UserAccountBean updater = (UserAccountBean) udao.findByPK(avb.getUserId());
sea.setUpdater(updater);
eventLogs.add(sea);
}
// logger.warning("^^^ finished iteration");
request.setAttribute("eventLogs", eventLogs);
forwardPage(Page.SIGN_STUDY_SUBJECT);
}
/**
* Each of the event CRFs with its corresponding CRFBean. Then generates a
* list of DisplayEventCRFBeans, one for each event CRF.
*
* @param eventCRFs
* The list of event CRFs for this study event.
* @return The list of DisplayEventCRFBeans for this study event.
*/
public static ArrayList getDisplayEventCRFs(StudyBean study, DataSource ds, ArrayList eventCRFs, UserAccountBean ub, StudyUserRoleBean currentRole,
SubjectEventStatus status) {
ArrayList answer = new ArrayList();
// HashMap definitionsById = new HashMap();
int i;
/*
* for (i = 0; i < eventDefinitionCRFs.size(); i++) {
* EventDefinitionCRFBean edc = (EventDefinitionCRFBean)
* eventDefinitionCRFs.get(i); definitionsById.put(new
* Integer(edc.getStudyEventDefinitionId()), edc); }
*/
StudyEventDAO sedao = new StudyEventDAO(ds);
CRFDAO cdao = new CRFDAO(ds);
CRFVersionDAO cvdao = new CRFVersionDAO(ds);
ItemDataDAO iddao = new ItemDataDAO(ds);
EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(ds);
for (i = 0; i < eventCRFs.size(); i++) {
EventCRFBean ecb = (EventCRFBean) eventCRFs.get(i);
// populate the event CRF with its crf bean
int crfVersionId = ecb.getCRFVersionId();
CRFBean cb = cdao.findByVersionId(crfVersionId);
ecb.setCrf(cb);
CRFVersionBean cvb = (CRFVersionBean) cvdao.findByPK(crfVersionId);
ecb.setCrfVersion(cvb);
// then get the definition so we can call
// DisplayEventCRFBean.setFlags
int studyEventId = ecb.getStudyEventId();
int studyEventDefinitionId = sedao.getDefinitionIdFromStudyEventId(studyEventId);
// EventDefinitionCRFBean edc = (EventDefinitionCRFBean)
// definitionsById.get(new Integer(
// studyEventDefinitionId));
// fix problem of the above code(commented out), find the correct
// edc, note that on definitionId can be related to multiple
// eventdefinitioncrfBeans
EventDefinitionCRFBean edc = edcdao.findByStudyEventDefinitionIdAndCRFId(study, studyEventDefinitionId, cb.getId());
// below added 092007 tbh
// rules updated 112007 tbh
if (status.equals(SubjectEventStatus.LOCKED) || status.equals(SubjectEventStatus.SKIPPED) || status.equals(SubjectEventStatus.STOPPED)) {
ecb.setStage(DataEntryStage.LOCKED);
// we need to set a SED-wide flag here, because other edcs
// in this event can be filled in and change the status, tbh
} else if (status.equals(SubjectEventStatus.INVALID)) {
ecb.setStage(DataEntryStage.LOCKED);
} else if (!cb.getStatus().equals(Status.AVAILABLE)) {
ecb.setStage(DataEntryStage.LOCKED);
} else if (!cvb.getStatus().equals(Status.AVAILABLE)) {
ecb.setStage(DataEntryStage.LOCKED);
}
// above added 092007-102007 tbh
// TODO need to refactor since this is similar to other code, tbh
if (edc != null) {
// System.out.println("edc is not null, need to set flags");
DisplayEventCRFBean dec = new DisplayEventCRFBean();
// System.out.println("edc.isDoubleEntry()" +
// edc.isDoubleEntry() + ecb.getId());
dec.setFlags(ecb, ub, currentRole, edc.isDoubleEntry());
// if (dec.isLocked()) {
// System.out.println("*** found a locked DEC: " + edc.getCrfName());
// }
ArrayList idata = iddao.findAllByEventCRFId(ecb.getId());
if (!idata.isEmpty()) {
// consider an event crf started only if item data get
// created
answer.add(dec);
}
}
}
return answer;
}
/**
* Finds all the event definitions for which no event CRF exists - which is
* the list of event definitions with uncompleted event CRFs.
*
* @param eventDefinitionCRFs
* All of the event definition CRFs for this study event.
* @param eventCRFs
* All of the event CRFs for this study event.
* @return The list of event definitions for which no event CRF exists.
*/
public static ArrayList getUncompletedCRFs(DataSource ds, ArrayList eventDefinitionCRFs, ArrayList eventCRFs, SubjectEventStatus status) {
int i;
HashMap completed = new HashMap();
HashMap startedButIncompleted = new HashMap();
ArrayList answer = new ArrayList();
/**
* A somewhat non-standard algorithm is used here: let answer = empty;
* foreach event definition ED, set isCompleted(ED) = false foreach
* event crf EC, set isCompleted(EC.getEventDefinition()) = true foreach
* event definition ED, if (!isCompleted(ED)) { answer += ED; } return
* answer; This algorithm is guaranteed to find all the event
* definitions for which no event CRF exists.
*
* The motivation for using this algorithm is reducing the number of
* database hits.
*
* -jun-we have to add more CRFs here: the event CRF which dones't have
* item data yet
*/
for (i = 0; i < eventDefinitionCRFs.size(); i++) {
EventDefinitionCRFBean edcrf = (EventDefinitionCRFBean) eventDefinitionCRFs.get(i);
completed.put(new Integer(edcrf.getCrfId()), Boolean.FALSE);
startedButIncompleted.put(new Integer(edcrf.getCrfId()), new EventCRFBean());
}
CRFVersionDAO cvdao = new CRFVersionDAO(ds);
ItemDataDAO iddao = new ItemDataDAO(ds);
for (i = 0; i < eventCRFs.size(); i++) {
EventCRFBean ecrf = (EventCRFBean) eventCRFs.get(i);
int crfId = cvdao.getCRFIdFromCRFVersionId(ecrf.getCRFVersionId());
ArrayList idata = iddao.findAllByEventCRFId(ecrf.getId());
if (!idata.isEmpty()) {// this crf has data already
completed.put(new Integer(crfId), Boolean.TRUE);
} else {// event crf got created, but no data entered
startedButIncompleted.put(new Integer(crfId), ecrf);
}
}
// TODO possible relation to 1689 here, tbh
for (i = 0; i < eventDefinitionCRFs.size(); i++) {
DisplayEventDefinitionCRFBean dedc = new DisplayEventDefinitionCRFBean();
EventDefinitionCRFBean edcrf = (EventDefinitionCRFBean) eventDefinitionCRFs.get(i);
// System.out.println("created dedc with edcrf
// "+edcrf.getCrfName()+" default version "+
// edcrf.getDefaultVersionName()+", id
// "+edcrf.getDefaultVersionId());
dedc.setEdc(edcrf);
// below added tbh, 112007 to fix bug 1943
if (status.equals(SubjectEventStatus.LOCKED)) {
dedc.setStatus(Status.LOCKED);
}
Boolean b = (Boolean) completed.get(new Integer(edcrf.getCrfId()));
EventCRFBean ev = (EventCRFBean) startedButIncompleted.get(new Integer(edcrf.getCrfId()));
if (b == null || !b.booleanValue()) {
// System.out.println("entered boolean loop with ev
// "+ev.getId()+" crf version id "+
// ev.getCRFVersionId());
dedc.setEventCRF(ev);
answer.add(dedc);
// System.out.println("just added dedc to answer");
// removed, tbh, since this is proving nothing, 11-2007
/*
* if (dedc.getEdc().getDefaultVersionId() !=
* dedc.getEventCRF().getId()) { System.out.println("ID
* MISMATCH: edc name "+dedc.getEdc().getName()+ ", default
* version id "+dedc.getEdc().getDefaultVersionId()+ " event crf
* id "+dedc.getEventCRF().getId()); }
*/
}
}
return answer;
}
public static void populateUncompletedCRFsWithCRFAndVersions(DataSource ds, ArrayList uncompletedEventDefinitionCRFs) {
CRFDAO cdao = new CRFDAO(ds);
CRFVersionDAO cvdao = new CRFVersionDAO(ds);
int size = uncompletedEventDefinitionCRFs.size();
for (int i = 0; i < size; i++) {
DisplayEventDefinitionCRFBean dedcrf = (DisplayEventDefinitionCRFBean) uncompletedEventDefinitionCRFs.get(i);
CRFBean cb = (CRFBean) cdao.findByPK(dedcrf.getEdc().getCrfId());
dedcrf.getEdc().setCrf(cb);
ArrayList versions = (ArrayList) cvdao.findAllActiveByCRF(dedcrf.getEdc().getCrfId());
dedcrf.getEdc().setVersions(versions);
uncompletedEventDefinitionCRFs.set(i, dedcrf);
}
}
/*
* //Returns an array list which contain all completed eventcrf and
* uncompleted private ArrayList createAllEventCRFs(ArrayList eventCRFs,
* ArrayList eventDefinitionCRFs) { CRFDAO cdao = new
* CRFDAO(sm.getDataSource()); CRFVersionDAO vdao = new
* CRFVersionDAO(sm.getDataSource()); HashMap crfIdMap = new HashMap();
* ArrayList evs = new ArrayList(); for (int i = 0; i <
* eventDefinitionCRFs.size(); i++) { EventDefinitionCRFBean edc =
* (EventDefinitionCRFBean) eventDefinitionCRFs.get(i); crfIdMap.put(new
* Integer(edc.getCrfId()), Boolean.FALSE); } for (int i = 0; i <
* eventCRFs.size(); i++) { EventCRFBean eventCRF = (EventCRFBean)
* eventCRFs.get(i); logger.info("\nstage:" +
* eventCRF.getStage().getName()); CRFBean crf =
* cdao.findByVersionId(eventCRF.getCRFVersionId()); CRFVersionBean cVersion
* = (CRFVersionBean) vdao.findByPK(eventCRF.getCRFVersionId());
* eventCRF.setCrf(crf); eventCRF.setCrfVersion(cVersion);
* evs.add(eventCRF); if (crfIdMap.containsKey(new Integer(crf.getId()))) {
* crfIdMap.put(new Integer(crf.getId()), Boolean.TRUE);//already has //
* entry for this // crf } }//for //find those crfs which are not started
* yet(stage=uncompleted) Set keys = crfIdMap.keySet(); Iterator it =
* keys.iterator(); while (it.hasNext()) { Integer crfId = (Integer)
* it.next(); if (crfIdMap.containsKey(crfId) &&
* crfIdMap.get(crfId).equals(Boolean.FALSE)) { EventCRFBean ec = new
* EventCRFBean(); CRFBean crf1 = (CRFBean) cdao.findByPK(crfId.intValue());
* ArrayList versions = vdao.findAllByCRFId(crfId.intValue());
* crf1.setVersions(versions); ec.setCrf(crf1); logger.info("\nstage:" +
* ec.getStage().getName()); evs.add(ec); } }//while return evs; }
*/
@Override
protected String getAdminServlet() {
if (ub.isSysAdmin()) {
return SecureController.ADMIN_SERVLET_CODE;
} else {
return "";
}
}
public void mayAccess() throws InsufficientPermissionException {
FormProcessor fp = new FormProcessor(request);
StudySubjectDAO subdao = new StudySubjectDAO(sm.getDataSource());
int studySubId = fp.getInt("id", true);
if (studySubId > 0) {
if (!entityIncluded(studySubId, ub.getName(), subdao, sm.getDataSource())) {
addPageMessage(respage.getString("required_study_subject_not_belong"));
throw new InsufficientPermissionException(Page.MENU, resexception.getString("entity_not_belong_studies"), "1");
}
}
}
}