/*
* Concept profile generation tool suite
* Copyright (C) 2015 Biosemantics Group, Erasmus University Medical Center,
* Rotterdam, The Netherlands
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published
* by the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Affero General Public License for more details.
*
* You should have received a copy of the GNU Affero General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>
*/
package org.erasmusmc.ontology.ontologyutilities;
import org.erasmusmc.ontology.OntologyFileLoader;
import org.erasmusmc.ontology.OntologyManager;
import org.erasmusmc.ontology.OntologyStore;
import org.erasmusmc.utilities.StringUtilities;
public class LoadOntologyIntoDatabase {
public static String databaseName = "UMLS2010ABHomologeneJochemToxV1_6";
public static String ontologyFile = "/home/khettne/Thesauri/UMLS2010ABHomologeneJochemToxV1_6.ontology";
public static void main(String[] args) {
System.out.println(StringUtilities.now() + "\tLoading ontology");
OntologyFileLoader loader = new OntologyFileLoader();
OntologyStore ontology = loader.load(ontologyFile);
OntologyCurator curator = new OntologyCurator();
curator.curateAndPrepare(ontology);
System.out.println(StringUtilities.now() + "\tDumping in database");
ontology.setName(databaseName);
OntologyManager manager = new OntologyManager();
manager.dumpStoreInDatabase(ontology);
}
}