/*
* Concept profile generation and analysis for Gene-Disease paper
* Copyright (C) 2015 Biosemantics Group, Leiden University Medical Center
* Leiden, The Netherlands
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published
* by the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Affero General Public License for more details.
*
* You should have received a copy of the GNU Affero General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>
*/
package KnowledgeTransfer;
/**
*
* CPGP_BASE_DIR/
* conceptid2frequency.txt
* groundhogs/MedlineBlaBlav16/
* workspace/resources/
* Thesaurus2010v16_diseases.cid
* HPRD_genes_v16.cid
* results/
* profiles/[..]
* analysis/[..]
* matchscores.txt
*
*/
public class PathConfigsDemo {
public static final String CPGP_BASE_DIR = "/tmp/cpgp/"; // "/media/Meuk/Groundhogs/";
public static final String CONCEPT_FREQUENCIES_FILENAME = CPGP_BASE_DIR + "conceptid2frequency.txt";
public static final String MEDLINE_GROUNDHOG_FOLDER_NAME = "groundhogs/Medline1980till17Jul2014_UMLS2010ABHomologeneJochemToxV1_6/";
public static final String CONCEPT_IDS_DIR = CPGP_BASE_DIR + "workspace/resources/";
public static final String THESAURUS_DISEASE_CIDS = CONCEPT_IDS_DIR + "Thesaurus2010v16_diseases.cid";
public static final String OMIM_DISEASE_CIDS = CONCEPT_IDS_DIR + "OMIM_diseases.cid";
public static final String HPRD_GENE_CIDS = CONCEPT_IDS_DIR + "HPRD_genes_v16.cid";
public static final String OMIM_GENE_CIDS = CONCEPT_IDS_DIR + "OMIM_genes_v16.cid";
public static final String RESULTS_BASE_DIR = CPGP_BASE_DIR + "results/";
public static final String CONCEPT_PROFILES_DIR = RESULTS_BASE_DIR + "profiles/";
public static final String ANALYSIS_DIR = RESULTS_BASE_DIR + "analysis/";
public static final String MATCH_SCORE_FILENAME = RESULTS_BASE_DIR + "matchscores.txt";
public static final String ONTOLOGY_NAME = "UMLS2010ABHomologeneJochemToxV1_6";
}