/* * Concept profile generation tool suite * Copyright (C) 2015 Biosemantics Group, Erasmus University Medical Center, * Rotterdam, The Netherlands * * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU Affero General Public License as published * by the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Affero General Public License for more details. * * You should have received a copy of the GNU Affero General Public License * along with this program. If not, see <http://www.gnu.org/licenses/> */ package org.erasmusmc.rmi.conceptmapper.server; import java.rmi.RemoteException; import java.rmi.server.UnicastRemoteObject; import java.util.ArrayList; import java.util.Collection; import java.util.HashMap; import java.util.List; import java.util.Map; import org.erasmusmc.utilities.ReadTextFile; public class RMIConceptMapperImplementation extends UnicastRemoteObject implements RMIConceptMapperInterface { private static final long serialVersionUID = -6638799498443801109L; private Map<Integer, List<ConceptMapping>> cid2mappings = new HashMap<Integer, List<ConceptMapping>>(); protected RMIConceptMapperImplementation(String filename) throws RemoteException { super(); ReadTextFile in = new ReadTextFile(filename); for (String line : in){ String[] cols = line.split("\t"); Integer cid = Integer.parseInt(cols[0]); ConceptMapping mapping = new ConceptMapping(); mapping.identifier = cols[1]; mapping.name = cols[2]; addToMapping(cid, mapping); } } private void addToMapping(Integer cid, ConceptMapping mapping) { List<ConceptMapping> mappings = cid2mappings.get(cid); if (mappings == null){ mappings = new ArrayList<ConceptMapping>(1); cid2mappings.put(cid, mappings); } mappings.add(mapping); } public List<ConceptMapping> getMapping(int conceptID) { return cid2mappings.get(conceptID); } public Map<Integer, List<ConceptMapping>> getMappings(Collection<Integer> conceptIDs){ Map<Integer, List<ConceptMapping>> result = new HashMap<Integer, List<ConceptMapping>>(conceptIDs.size()); for (Integer conceptID : conceptIDs) { List<ConceptMapping> mappings = cid2mappings.get(conceptID); if (mappings != null) result.put(conceptID, mappings); } return result; } }