/*
* Concept profile generation tool suite
* Copyright (C) 2015 Biosemantics Group, Erasmus University Medical Center,
* Rotterdam, The Netherlands
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published
* by the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Affero General Public License for more details.
*
* You should have received a copy of the GNU Affero General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>
*/
/**
* @author Gaurav Bhalotia
* @author Ariel Schwartz
*
*/
package org.erasmusmc.dataimport.Medline.xmlparsers.medline;
import java.sql.Types;
import org.erasmusmc.dataimport.Medline.xmlparsers.NodeHandler;
public class Chemical extends NodeHandler{
static final String[] columnNameDef = {
"pmid",
"registry_number",
"name_of_substance"
};
static final String[] xmlElementNameDef = {
"PMID",
"Chemical.RegistryNumber",
"Chemical.NameOfSubstance"
};
static final int[] columnTypeDef = {
Types.INTEGER,
Types.VARCHAR,
Types.VARCHAR
};
public Chemical(String pmid) throws Exception{
tableName = "medline_chemical_list";
xmlNodeName = "Chemical";
columnName = columnNameDef;
xmlElementName = xmlElementNameDef;
columnType = columnTypeDef;
initialize();
/* Add any data that does not come through XML to the hashtable */
putColumnValue("PMID", pmid);
}
}