/** * (C) Copyright IBM Corp. 2010, 2015 * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. *  */ package com.ibm.bi.dml.udf.lib; import com.ibm.bi.dml.runtime.controlprogram.caching.MatrixObject; import com.ibm.bi.dml.runtime.matrix.data.MatrixBlock; import com.ibm.bi.dml.udf.FunctionParameter; import com.ibm.bi.dml.udf.Matrix; import com.ibm.bi.dml.udf.PackageFunction; import com.ibm.bi.dml.udf.PackageRuntimeException; import com.ibm.bi.dml.udf.Matrix.ValueType; /** * Wrapper class for conversions of bit vectors to condensed position vectors. * The semantics are equivalent to the following dml snippet: * # bitvector into position vector, e.g., 1011 -> 1034 * Bv = seq(1,nrow(B)) * B; * # gather positions into condensed vector * V = removeEmpty(target=Bv, margin="rows"); * * Note that the inverse operation would be a scatter that can be implemented * via the following dml snippet: * # position vector into bit vector, e.g., 1034 -> 1011 * B = table( V, 1 ); */ public class GatherWrapper extends PackageFunction { private static final long serialVersionUID = 1L; private static final String OUTPUT_FILE = "TMP"; //return matrix private Matrix ret; @Override public int getNumFunctionOutputs() { return 1; } @Override public FunctionParameter getFunctionOutput(int pos) { if(pos == 0) return ret; throw new PackageRuntimeException("Invalid function output being requested"); } @Override public void execute() { try { //get input and meta information Matrix inM = (Matrix) getFunctionInput(0); MatrixObject mo = inM.getMatrixObject(); MatrixBlock mb = mo.acquireRead(); int len1 = mb.getNumRows(); int len2 = (int) mb.getNonZeros(); //create condensed position vector double[][] outM = new double[len2][1]; int pos = 0; for( int i=0; i<len1; i++ ) { double val = mb.quickGetValue(i, 0); if( val != 0 ) outM[pos++][0] = i+1; } mo.release(); //create and copy output matrix String dir = createOutputFilePathAndName( OUTPUT_FILE ); ret = new Matrix( dir, mb.getNonZeros(), 1, ValueType.Double ); ret.setMatrixDoubleArray(outM); } catch (Exception e) { throw new PackageRuntimeException("Error executing external order function", e); } } }