/*
* ------------------------------------------------------------------------
*
* University of Konstanz, Germany and
* KNIME GmbH, Konstanz, Germany
* Website: http://www.knime.org; Email: contact@knime.org
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License, Version 3, as
* published by the Free Software Foundation.
*
* This program is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program; if not, see <http://www.gnu.org/licenses>.
*
* Additional permission under GNU GPL version 3 section 7:
*
* KNIME interoperates with ECLIPSE solely via ECLIPSE's plug-in APIs.
* Hence, KNIME and ECLIPSE are both independent programs and are not
* derived from each other. Should, however, the interpretation of the
* GNU GPL Version 3 ("License") under any applicable laws result in
* KNIME and ECLIPSE being a combined program, KNIME GMBH herewith grants
* you the additional permission to use and propagate KNIME together with
* ECLIPSE with only the license terms in place for ECLIPSE applying to
* ECLIPSE and the GNU GPL Version 3 applying for KNIME, provided the
* license terms of ECLIPSE themselves allow for the respective use and
* propagation of ECLIPSE together with KNIME.
*
* Additional permission relating to nodes for KNIME that extend the Node
* Extension (and in particular that are based on subclasses of NodeModel,
* NodeDialog, and NodeView) and that only interoperate with KNIME through
* standard APIs ("Nodes"):
* Nodes are deemed to be separate and independent programs and to not be
* covered works. Notwithstanding anything to the contrary in the
* License, the License does not apply to Nodes, you are not required to
* license Nodes under the License, and you are granted a license to
* prepare and propagate Nodes, in each case even if such Nodes are
* propagated with or for interoperation with KNIME. The owner of a Node
* may freely choose the license terms applicable to such Node, including
* when such Node is propagated with or for interoperation with KNIME.
---------------------------------------------------------------------
*
*/
package org.knime.knip.features;
import java.util.ArrayList;
import java.util.List;
import net.imglib2.type.numeric.RealType;
import org.knime.core.node.ExecutionContext;
import org.knime.knip.base.node.nodesettings.SettingsModelDimSelection;
import org.knime.knip.core.KNIPGateway;
import org.knime.knip.core.ui.imgviewer.events.RulebasedLabelFilter;
import org.knime.knip.features.groups.ImgLabelingFeatureSetGroup;
import org.knime.knip.features.groups.ImgPlusFeatureSetGroup;
import org.knime.knip.features.groups.PairedFeatureSetGroup;
import org.knime.knip.features.node.model.FeatureSetInfo;
import org.knime.knip.features.sets.FeatureSet;
import org.scijava.module.Module;
import org.scijava.plugin.Plugin;
import org.scijava.service.AbstractService;
/**
* Default implementation of {@link FeatureService}
*
* @author Christian Dietz, University of Konstanz
*/
@Plugin(type = FeatureService.class)
public class DefaultFeatureService extends AbstractService implements FeatureService {
@Override
public <L> FeatureSetGroup getFeatureGroup(final List<FeatureSetInfo> infos, final int imgColIndex,
final int labColIdx, final boolean append, final boolean appendOverlappingSegments,
final boolean appendSegmentInformation, final boolean intersectionMode,
final RulebasedLabelFilter<L> rulebasedLabelFilter,
final RulebasedLabelFilter<L> rulebasedOverlappingLabelFilter, final ExecutionContext exec,
final SettingsModelDimSelection dimSelection) {
// just labeling
if (imgColIndex == -1 && labColIdx != -1) {
return new ImgLabelingFeatureSetGroup<>(infos, labColIdx, append, appendOverlappingSegments,
appendSegmentInformation, intersectionMode, rulebasedLabelFilter, rulebasedOverlappingLabelFilter,
exec, dimSelection);
// just img
} else if (imgColIndex != -1 && labColIdx == -1) {
return new ImgPlusFeatureSetGroup<>(infos, imgColIndex, append, dimSelection);
// img and labeling
} else {
return new PairedFeatureSetGroup<>(infos, imgColIndex, labColIdx, append, appendOverlappingSegments,
appendSegmentInformation, intersectionMode, rulebasedLabelFilter, rulebasedOverlappingLabelFilter,
exec, dimSelection);
}
}
@SuppressWarnings("unchecked")
@Override
public <I, O extends RealType<O>> List<FeatureSet<I, O>> getValidFeatureSets(final Class<?> object,
final Class<I> type, final List<FeatureSetInfo> infos) {
final List<FeatureSet<I, O>> validSets = new ArrayList<>();
for (final FeatureSetInfo info : infos) {
Module load = info.load();
@SuppressWarnings("rawtypes")
final FeatureSet fs = (FeatureSet) load.getDelegateObject();
// FIXME: isCompatible is just a workaround because I was not able
// to get the desired information from the generic types, yet.
if (fs.isCompatible(object, type)) {
fs.setEnvironment(KNIPGateway.ops());
validSets.add(fs);
} else {
// FIXME: Nicer name for featureset
KNIPGateway.log().warn("Selected feature set " + load.getInfo().getLabel()
+ " can't handle the provided input. The feature set will be ignored!");
}
}
return validSets;
}
}