/*
* ------------------------------------------------------------------------
*
* Copyright (C) 2003 - 2013
* University of Konstanz, Germany and
* KNIME GmbH, Konstanz, Germany
* Website: http://www.knime.org; Email: contact@knime.org
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License, Version 3, as
* published by the Free Software Foundation.
*
* This program is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program; if not, see <http://www.gnu.org/licenses>.
*
* Additional permission under GNU GPL version 3 section 7:
*
* KNIME interoperates with ECLIPSE solely via ECLIPSE's plug-in APIs.
* Hence, KNIME and ECLIPSE are both independent programs and are not
* derived from each other. Should, however, the interpretation of the
* GNU GPL Version 3 ("License") under any applicable laws result in
* KNIME and ECLIPSE being a combined program, KNIME GMBH herewith grants
* you the additional permission to use and propagate KNIME together with
* ECLIPSE with only the license terms in place for ECLIPSE applying to
* ECLIPSE and the GNU GPL Version 3 applying for KNIME, provided the
* license terms of ECLIPSE themselves allow for the respective use and
* propagation of ECLIPSE together with KNIME.
*
* Additional permission relating to nodes for KNIME that extend the Node
* Extension (and in particular that are based on subclasses of NodeModel,
* NodeDialog, and NodeView) and that only interoperate with KNIME through
* standard APIs ("Nodes"):
* Nodes are deemed to be separate and independent programs and to not be
* covered works. Notwithstanding anything to the contrary in the
* License, the License does not apply to Nodes, you are not required to
* license Nodes under the License, and you are granted a license to
* prepare and propagate Nodes, in each case even if such Nodes are
* propagated with or for interoperation with KNIME. The owner of a Node
* may freely choose the license terms applicable to such Node, including
* when such Node is propagated with or for interoperation with KNIME.
* --------------------------------------------------------------------- *
*
*/
package org.knime.knip.base.nodes.misc;
import java.util.ArrayList;
import java.util.List;
import org.knime.core.data.DataType;
import org.knime.core.data.collection.CollectionCellFactory;
import org.knime.core.data.collection.ListCell;
import org.knime.core.data.def.DoubleCell;
import org.knime.core.node.defaultnodesettings.SettingsModel;
import org.knime.knip.base.data.img.ImgPlusValue;
import org.knime.knip.base.node.ValueToCellNodeDialog;
import org.knime.knip.base.node.ValueToCellNodeFactory;
import org.knime.knip.base.node.ValueToCellNodeModel;
import net.imglib2.Cursor;
import net.imglib2.img.Img;
import net.imglib2.type.numeric.RealType;
/**
* Converts an {@link Img} to a Collection of {@link DoubleCell}s
*
* @author <a href="mailto:dietzc85@googlemail.com">Christian Dietz</a>
* @author <a href="mailto:horn_martin@gmx.de">Martin Horn</a>
* @author <a href="mailto:michael.zinsmaier@googlemail.com">Michael Zinsmaier</a>
* @param <T>
*/
public class ImgToDataRowNodeFactory<T extends RealType<T>> extends ValueToCellNodeFactory<ImgPlusValue<T>> {
@Override
public ValueToCellNodeModel<ImgPlusValue<T>, ListCell> createNodeModel() {
return new ValueToCellNodeModel<ImgPlusValue<T>, ListCell>() {
@Override
protected ListCell compute(final ImgPlusValue<T> cellValue) throws Exception {
Cursor<T> cursor = cellValue.getImgPlus().cursor();
List<DoubleCell> list = new ArrayList<DoubleCell>();
while (cursor.hasNext()) {
list.add(new DoubleCell(cursor.next().getRealDouble()));
}
return CollectionCellFactory.createListCell(list);
}
@Override
protected void addSettingsModels(final List<SettingsModel> settingsModels) {
// Nothing to add here
}
@Override
protected DataType getOutDataCellListCellType() {
return DoubleCell.TYPE;
}
};
}
@Override
protected int getNrNodeViews() {
return 1;
}
/**
* {@inheritDoc}
*/
@Override
protected ValueToCellNodeDialog<ImgPlusValue<T>> createNodeDialog() {
return new ValueToCellNodeDialog<ImgPlusValue<T>>() {
@Override
public void addDialogComponents() {
// Nothing to do here
}
/**
* {@inheritDoc}
*/
@Override
protected String getDefaultSuffixForAppend() {
return "_itdr";
}
};
}
}