/* * ------------------------------------------------------------------------ * * Copyright (C) 2003 - 2013 * University of Konstanz, Germany and * KNIME GmbH, Konstanz, Germany * Website: http://www.knime.org; Email: contact@knime.org * * This program is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License, Version 3, as * published by the Free Software Foundation. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program; if not, see <http://www.gnu.org/licenses>. * * Additional permission under GNU GPL version 3 section 7: * * KNIME interoperates with ECLIPSE solely via ECLIPSE's plug-in APIs. * Hence, KNIME and ECLIPSE are both independent programs and are not * derived from each other. Should, however, the interpretation of the * GNU GPL Version 3 ("License") under any applicable laws result in * KNIME and ECLIPSE being a combined program, KNIME GMBH herewith grants * you the additional permission to use and propagate KNIME together with * ECLIPSE with only the license terms in place for ECLIPSE applying to * ECLIPSE and the GNU GPL Version 3 applying for KNIME, provided the * license terms of ECLIPSE themselves allow for the respective use and * propagation of ECLIPSE together with KNIME. * * Additional permission relating to nodes for KNIME that extend the Node * Extension (and in particular that are based on subclasses of NodeModel, * NodeDialog, and NodeView) and that only interoperate with KNIME through * standard APIs ("Nodes"): * Nodes are deemed to be separate and independent programs and to not be * covered works. Notwithstanding anything to the contrary in the * License, the License does not apply to Nodes, you are not required to * license Nodes under the License, and you are granted a license to * prepare and propagate Nodes, in each case even if such Nodes are * propagated with or for interoperation with KNIME. The owner of a Node * may freely choose the license terms applicable to such Node, including * when such Node is propagated with or for interoperation with KNIME. * --------------------------------------------------------------------- * * */ package org.knime.knip.base.nodes.proc.multilvlthresholding; import java.util.List; import org.knime.core.node.defaultnodesettings.SettingsModel; import org.knime.core.node.defaultnodesettings.SettingsModelIntegerBounded; import org.knime.core.node.defaultnodesettings.SettingsModelString; import org.knime.knip.base.node.ImgPlusToImgPlusNodeModel; import org.knime.knip.core.util.ImgPlusFactory; import net.imagej.ImgPlus; import net.imglib2.ops.operation.Operations; import net.imglib2.ops.operation.UnaryOutputOperation; import net.imglib2.ops.operation.iterableinterval.unary.multilevelthresholder.MultilevelThresholderOp; import net.imglib2.ops.operation.iterableinterval.unary.multilevelthresholder.MultilevelThresholderType; import net.imglib2.ops.operation.iterableinterval.unary.multilevelthresholder.OtsuMultilevelThresholder; import net.imglib2.ops.operation.iterableinterval.unary.multilevelthresholder.ThresholdValueCollection; import net.imglib2.type.NativeType; import net.imglib2.type.numeric.RealType; /** * Multi-Level OTSU Thresholding * * @param <T> the pixel type of the input and output image * * @author <a href="mailto:dietzc85@googlemail.com">Christian Dietz</a> * @author <a href="mailto:horn_martin@gmx.de">Martin Horn</a> * * @author friedrichm, University of Konstanz */ public class MultilevelThresholderNodeModel<T extends RealType<T> & NativeType<T>> extends ImgPlusToImgPlusNodeModel<T, T> { static SettingsModelIntegerBounded createNumberOfIntensities() { return new SettingsModelIntegerBounded("number_of_intensities", 256, 2, Integer.MAX_VALUE); } static SettingsModelIntegerBounded createNumberOfLevels() { return new SettingsModelIntegerBounded("number_of_levels", 3, 2, Integer.MAX_VALUE); } static SettingsModelString createThresholderModel() { return new SettingsModelString("thresholder", MultilevelThresholderType.OTSU.name()); } private final SettingsModelIntegerBounded m_numberOfIntensities = createNumberOfIntensities(); private final SettingsModelIntegerBounded m_numberOfLevels = createNumberOfLevels(); private final SettingsModelString m_thresholder = createThresholderModel(); /** * Constructor */ protected MultilevelThresholderNodeModel() { super("X", "Y"); } @Override protected void addSettingsModels(final List<SettingsModel> settingsModels) { settingsModels.add(m_thresholder); settingsModels.add(m_numberOfLevels); settingsModels.add(m_numberOfIntensities); } @Override protected UnaryOutputOperation<ImgPlus<T>, ImgPlus<T>> op(final ImgPlus<T> imgPlus) { UnaryOutputOperation<ImgPlus<T>, ThresholdValueCollection> op = null; switch (Enum.valueOf(MultilevelThresholderType.class, m_thresholder.getStringValue())) { case OTSU: op = new OtsuMultilevelThresholder<T, ImgPlus<T>>(m_numberOfLevels.getIntValue(), m_numberOfIntensities.getIntValue()); break; default: throw new IllegalArgumentException("Unknown thresholding method"); } return Operations.wrap(new MultilevelThresholderOp<T, ImgPlus<T>, ImgPlus<T>>(op), ImgPlusFactory.<T, T> get(imgPlus)); } /** * {@inheritDoc} */ @Override protected int getMinDimensions() { return 2; } }