/*
* ------------------------------------------------------------------------
*
* Copyright (C) 2003 - 2013
* University of Konstanz, Germany and
* KNIME GmbH, Konstanz, Germany
* Website: http://www.knime.org; Email: contact@knime.org
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License, Version 3, as
* published by the Free Software Foundation.
*
* This program is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program; if not, see <http://www.gnu.org/licenses>.
*
* Additional permission under GNU GPL version 3 section 7:
*
* KNIME interoperates with ECLIPSE solely via ECLIPSE's plug-in APIs.
* Hence, KNIME and ECLIPSE are both independent programs and are not
* derived from each other. Should, however, the interpretation of the
* GNU GPL Version 3 ("License") under any applicable laws result in
* KNIME and ECLIPSE being a combined program, KNIME GMBH herewith grants
* you the additional permission to use and propagate KNIME together with
* ECLIPSE with only the license terms in place for ECLIPSE applying to
* ECLIPSE and the GNU GPL Version 3 applying for KNIME, provided the
* license terms of ECLIPSE themselves allow for the respective use and
* propagation of ECLIPSE together with KNIME.
*
* Additional permission relating to nodes for KNIME that extend the Node
* Extension (and in particular that are based on subclasses of NodeModel,
* NodeDialog, and NodeView) and that only interoperate with KNIME through
* standard APIs ("Nodes"):
* Nodes are deemed to be separate and independent programs and to not be
* covered works. Notwithstanding anything to the contrary in the
* License, the License does not apply to Nodes, you are not required to
* license Nodes under the License, and you are granted a license to
* prepare and propagate Nodes, in each case even if such Nodes are
* propagated with or for interoperation with KNIME. The owner of a Node
* may freely choose the license terms applicable to such Node, including
* when such Node is propagated with or for interoperation with KNIME.
* --------------------------------------------------------------------- *
*
*/
package org.knime.knip.base.nodes.proc.multilvlthresholding;
import java.util.List;
import org.knime.core.node.defaultnodesettings.SettingsModel;
import org.knime.core.node.defaultnodesettings.SettingsModelIntegerBounded;
import org.knime.core.node.defaultnodesettings.SettingsModelString;
import org.knime.knip.base.node.ImgPlusToImgPlusNodeModel;
import org.knime.knip.core.util.ImgPlusFactory;
import net.imagej.ImgPlus;
import net.imglib2.ops.operation.Operations;
import net.imglib2.ops.operation.UnaryOutputOperation;
import net.imglib2.ops.operation.iterableinterval.unary.multilevelthresholder.MultilevelThresholderOp;
import net.imglib2.ops.operation.iterableinterval.unary.multilevelthresholder.MultilevelThresholderType;
import net.imglib2.ops.operation.iterableinterval.unary.multilevelthresholder.OtsuMultilevelThresholder;
import net.imglib2.ops.operation.iterableinterval.unary.multilevelthresholder.ThresholdValueCollection;
import net.imglib2.type.NativeType;
import net.imglib2.type.numeric.RealType;
/**
* Multi-Level OTSU Thresholding
*
* @param <T> the pixel type of the input and output image
*
* @author <a href="mailto:dietzc85@googlemail.com">Christian Dietz</a>
* @author <a href="mailto:horn_martin@gmx.de">Martin Horn</a>
*
* @author friedrichm, University of Konstanz
*/
public class MultilevelThresholderNodeModel<T extends RealType<T> & NativeType<T>>
extends ImgPlusToImgPlusNodeModel<T, T> {
static SettingsModelIntegerBounded createNumberOfIntensities() {
return new SettingsModelIntegerBounded("number_of_intensities", 256, 2, Integer.MAX_VALUE);
}
static SettingsModelIntegerBounded createNumberOfLevels() {
return new SettingsModelIntegerBounded("number_of_levels", 3, 2, Integer.MAX_VALUE);
}
static SettingsModelString createThresholderModel() {
return new SettingsModelString("thresholder", MultilevelThresholderType.OTSU.name());
}
private final SettingsModelIntegerBounded m_numberOfIntensities = createNumberOfIntensities();
private final SettingsModelIntegerBounded m_numberOfLevels = createNumberOfLevels();
private final SettingsModelString m_thresholder = createThresholderModel();
/**
* Constructor
*/
protected MultilevelThresholderNodeModel() {
super("X", "Y");
}
@Override
protected void addSettingsModels(final List<SettingsModel> settingsModels) {
settingsModels.add(m_thresholder);
settingsModels.add(m_numberOfLevels);
settingsModels.add(m_numberOfIntensities);
}
@Override
protected UnaryOutputOperation<ImgPlus<T>, ImgPlus<T>> op(final ImgPlus<T> imgPlus) {
UnaryOutputOperation<ImgPlus<T>, ThresholdValueCollection> op = null;
switch (Enum.valueOf(MultilevelThresholderType.class, m_thresholder.getStringValue())) {
case OTSU:
op = new OtsuMultilevelThresholder<T, ImgPlus<T>>(m_numberOfLevels.getIntValue(),
m_numberOfIntensities.getIntValue());
break;
default:
throw new IllegalArgumentException("Unknown thresholding method");
}
return Operations.wrap(new MultilevelThresholderOp<T, ImgPlus<T>, ImgPlus<T>>(op),
ImgPlusFactory.<T, T> get(imgPlus));
}
/**
* {@inheritDoc}
*/
@Override
protected int getMinDimensions() {
return 2;
}
}