/*
* Copyright (C) 2010 Mark Rijnbeek <mark_rynbeek@users.sf.net>
*
* Contact: cdk-devel@lists.sourceforge.net
*
* This program is free software; you can redistribute it and/or
* modify it under the terms of the GNU Lesser General Public License
* as published by the Free Software Foundation; either version 2.1
* of the License, or (at your option) any later version.
* All we ask is that proper credit is given for our work, which includes
* - but is not limited to - adding the above copyright notice to the beginning
* of your source code files, and to any copyright notice that you may
* distribute with programs based on this work.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with this program; if not, write to the Free Software
* Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA.
*
*/
package org.openscience.cdk.io.formats;
import org.openscience.cdk.annotations.TestMethod;
import org.openscience.cdk.tools.DataFeatures;
/**
* Format for Symyx RGfiles (Rgroup query files).
* @cdk.module ioformats
* @cdk.githash
* @cdk.set io-formats
*/
public class RGroupQueryFormat implements IChemFormatMatcher {
private static IResourceFormat myself = null;
private RGroupQueryFormat() {
}
@TestMethod("testResourceFormatSet")
public static IResourceFormat getInstance() {
if (myself == null)
myself = new RGroupQueryFormat();
return myself;
}
@TestMethod("testGetFormatName")
public String getFormatName() {
return "Symyx Rgroup query files";
}
@TestMethod("testGetMIMEType")
public String getMIMEType() {
return null;
}
@TestMethod("testGetPreferredNameExtension")
public String getPreferredNameExtension() {
return getNameExtensions()[0];
}
@TestMethod("testGetNameExtensions")
public String[] getNameExtensions() {
return new String[] { "mol", "rgp" };
}
@TestMethod("testGetReaderClassName")
public String getReaderClassName() {
return "org.openscience.cdk.io.RGroupQueryReader";
}
@TestMethod("testGetWriterClassName")
public String getWriterClassName() {
return "org.openscience.cdk.io.RGroupQueryWriter";
}
public boolean matches(int lineNumber, String line) {
if (line.indexOf("$RGP") >= 0)
return true;
else
return false;
}
@TestMethod("testIsXMLBased")
public boolean isXMLBased() {
return false;
}
@TestMethod("testGetSupportedDataFeatures")
public int getSupportedDataFeatures() {
return getRequiredDataFeatures() | DataFeatures.HAS_2D_COORDINATES ;
}
@TestMethod("testGetRequiredDataFeatures")
public int getRequiredDataFeatures() {
return DataFeatures.HAS_ATOM_ELEMENT_SYMBOL;
}
}