/* $RCSfile: $
* $Author$
* $Date$
* $Revision$
*
* Copyright (C) 2006-2007 Egon Willighagen <egonw@users.sf.net>
*
* This library is free software; you can redistribute it and/or
* modify it under the terms of the GNU Lesser General Public
* License as published by the Free Software Foundation; either
* version 2.1 of the License, or (at your option) any later version.
*
* This library is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
* Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with this library; if not, write to the Free Software
* Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA.
*/
package org.openscience.cdk.protein.data;
import org.openscience.cdk.ChemObject;
import org.openscience.cdk.interfaces.IPDBStructure;
/**
* Holder for secundary protein structure elements. Lously modeled after
* the Jmol Structure.java.
*
* @author egonw
*
* @cdk.module data
* @cdk.githash
*/
public class PDBStructure extends ChemObject implements IPDBStructure {
private static final long serialVersionUID = -1877529009319324448L;
public final static String HELIX = "helix";
public final static String SHEET = "sheet";
public final static String TURN = "turn";
private String structureType;
private Character startChainID;
private Integer startSequenceNumber;
private Character startInsertionCode;
private Character endChainID;
private Integer endSequenceNumber;
private Character endInsertionCode;
/**
* get the ending Chain identifier of this structure.
*
* @return the ending Chain identifier of this structure
*/
public Character getEndChainID() {
return endChainID;
}
/**
* set the ending Chain identifier of this structure.
*
* @param endChainID the ending Chain identifier of this structure
*/
public void setEndChainID(Character endChainID) {
this.endChainID = endChainID;
}
/**
* get the ending Code for insertion of residues of this structure.
*
* @return the ending Code for insertion of residues of this structure
*/
public Character getEndInsertionCode() {
return endInsertionCode;
}
/**
* set the ending Code for insertion of residues of this structure.
*
* @param endInsertionCode the ending Code for insertion of residues of this structure
*/
public void setEndInsertionCode(Character endInsertionCode) {
this.endInsertionCode = endInsertionCode;
}
/**
* get the ending sequence number of this structure.
*
* @return the ending sequence number of this structure
*/
public Integer getEndSequenceNumber() {
return endSequenceNumber;
}
/**
* set the ending sequence number of this structure.
*
* @param endSequenceNumber the ending sequence number of this structure
*/
public void setEndSequenceNumber(Integer endSequenceNumber) {
this.endSequenceNumber = endSequenceNumber;
}
/**
* get start Chain identifier of this structure.
*
* @return the start Chain identifier of this structure
*/
public Character getStartChainID() {
return startChainID;
}
/**
* set the start Chain identifier of this structure.
*
* @param startChainID the start Chain identifier of this structure
*/
public void setStartChainID(Character startChainID) {
this.startChainID = startChainID;
}
/**
* get start Code for insertion of residues of this structure.
*
* @return the start Code for insertion of residues of this structure
*/
public Character getStartInsertionCode() {
return startInsertionCode;
}
/**
* set the start Chain identifier of this structure.
*
* @param startInsertionCode the start Chain identifier of this structure
*/
public void setStartInsertionCode(Character startInsertionCode) {
this.startInsertionCode = startInsertionCode;
}
/**
* get the start sequence number of this structure.
*
* @return the start sequence number of this structure
*/
public Integer getStartSequenceNumber() {
return startSequenceNumber;
}
/**
* set the start sequence number of this structure.
*
* @param startSequenceNumber the start sequence number of this structure
*/
public void setStartSequenceNumber(Integer startSequenceNumber) {
this.startSequenceNumber = startSequenceNumber;
}
/**
* get Structure Type of this structure.
*
* @return the Structure Type of this structure
*/
public String getStructureType() {
return structureType;
}
/**
* set the Structure Type of this structure.
*
* @param structureType the Structure Type of this structure
*/
public void setStructureType(String structureType) {
this.structureType = structureType;
}
}