/* $Revision$ $Author$ $Date$
*
* Copyright (C) 2005-2007 Egon Willighagen <egonw@users.sf.net>
*
* Contact: cdk-devel@lists.sourceforge.net
*
* This program is free software; you can redistribute it and/or
* modify it under the terms of the GNU Lesser General Public License
* as published by the Free Software Foundation; either version 2.1
* of the License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with this program; if not, write to the Free Software
* Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA.
*/
package org.openscience.cdk.debug;
import java.util.Map;
import org.openscience.cdk.ChemModel;
import org.openscience.cdk.interfaces.IChemModel;
import org.openscience.cdk.interfaces.IChemObjectBuilder;
import org.openscience.cdk.interfaces.IChemObjectChangeEvent;
import org.openscience.cdk.interfaces.IChemObjectListener;
import org.openscience.cdk.interfaces.ICrystal;
import org.openscience.cdk.interfaces.IMoleculeSet;
import org.openscience.cdk.interfaces.IReactionSet;
import org.openscience.cdk.interfaces.IRingSet;
import org.openscience.cdk.tools.ILoggingTool;
import org.openscience.cdk.tools.LoggingToolFactory;
/**
* Debugging data class.
*
* @author egonw
* @cdk.module datadebug
* @cdk.githash
*/
public class DebugChemModel extends ChemModel
implements IChemModel {
private static final long serialVersionUID = -920209300005079592L;
ILoggingTool logger =
LoggingToolFactory.createLoggingTool(DebugChemModel.class);
public void addListener(IChemObjectListener col) {
logger.debug("Adding listener: ", col);
super.addListener(col);
}
public int getListenerCount() {
logger.debug("Getting listener count: ", super.getListenerCount());
return super.getListenerCount();
}
public void removeListener(IChemObjectListener col) {
logger.debug("Removing listener: ", col);
super.removeListener(col);
}
public void notifyChanged() {
logger.debug("Notifying changed");
super.notifyChanged();
}
public void notifyChanged(IChemObjectChangeEvent evt) {
logger.debug("Notifying changed event: ", evt);
super.notifyChanged(evt);
}
public void setProperty(Object description, Object property) {
logger.debug("Setting property: ", description + "=" + property);
super.setProperty(description, property);
}
public void removeProperty(Object description) {
logger.debug("Removing property: ", description);
super.removeProperty(description);
}
public Object getProperty(Object description) {
logger.debug("Getting property: ", description + "=" + super.getProperty(description));
return super.getProperty(description);
}
public Map<Object,Object> getProperties() {
logger.debug("Getting properties");
return super.getProperties();
}
public String getID() {
logger.debug("Getting ID: ", super.getID());
return super.getID();
}
public void setID(String identifier) {
logger.debug("Setting ID: ", identifier);
super.setID(identifier);
}
public void setFlag(int flag_type, boolean flag_value) {
logger.debug("Setting flag: ", flag_type + "=" + flag_value);
super.setFlag(flag_type, flag_value);
}
public boolean getFlag(int flag_type) {
logger.debug("Setting flag: ", flag_type + "=" + super.getFlag(flag_type));
return super.getFlag(flag_type);
}
public void setProperties(Map<Object,Object> properties) {
logger.debug("Setting properties: ", properties);
super.setProperties(properties);
}
public void setFlags(boolean[] flagsNew) {
logger.debug("Setting flags:", flagsNew.length);
super.setFlags(flagsNew);
}
public boolean[] getFlags() {
logger.debug("Getting flags:", super.getFlags().length);
return super.getFlags();
}
public Object clone() throws CloneNotSupportedException {
Object clone = null;
try {
clone = super.clone();
} catch (Exception exception) {
logger.error("Could not clone DebugAtom: " + exception.getMessage(), exception);
logger.debug(exception);
}
return clone;
}
public IChemObjectBuilder getBuilder() {
return DebugChemObjectBuilder.getInstance();
}
public IMoleculeSet getMoleculeSet() {
logger.debug("Getting setOfMolecules: ", super.getMoleculeSet());
return super.getMoleculeSet();
}
public void setMoleculeSet(IMoleculeSet setOfMolecules) {
logger.debug("Setting setOfMolecules: ", setOfMolecules);
super.setMoleculeSet(setOfMolecules);
}
public IRingSet getRingSet() {
logger.debug("Getting ringSet: ", super.getRingSet());
return super.getRingSet();
}
public void setRingSet(IRingSet ringSet) {
logger.debug("Setting ringSet: ", ringSet);
super.setRingSet(ringSet);
}
public ICrystal getCrystal() {
logger.debug("Getting crystal: ", super.getCrystal());
return super.getCrystal();
}
public void setCrystal(ICrystal crystal) {
logger.debug("Setting crystal: ", crystal);
super.setCrystal(crystal);
}
public IReactionSet getReactionSet() {
logger.debug("Getting setOfReactions: ", super.getReactionSet());
return super.getReactionSet();
}
public void setReactionSet(IReactionSet sor) {
logger.debug("Setting setOfReactions: ", sor);
super.setReactionSet(sor);
}
}