/** * Copyright (C) 2001-2017 by RapidMiner and the contributors * * Complete list of developers available at our web site: * * http://rapidminer.com * * This program is free software: you can redistribute it and/or modify it under the terms of the * GNU Affero General Public License as published by the Free Software Foundation, either version 3 * of the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without * even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Affero General Public License for more details. * * You should have received a copy of the GNU Affero General Public License along with this program. * If not, see http://www.gnu.org/licenses/. */ package com.rapidminer.operator.learner.functions.kernel; import java.util.Iterator; import com.rapidminer.example.Attribute; import com.rapidminer.example.Example; import com.rapidminer.example.ExampleSet; import com.rapidminer.example.set.ExampleSetUtilities; import com.rapidminer.operator.OperatorException; import com.rapidminer.operator.OperatorProgress; /** * A model learned by the GPLearner. * * @author Piotr Kasprzak, Ingo Mierswa */ public class GPModel extends KernelModel { private static final long serialVersionUID = 6094706651995436944L; private static final int OPERATOR_PROGRESS_STEPS = 5000; private com.rapidminer.operator.learner.functions.kernel.gaussianprocess.Model model = null; public GPModel(ExampleSet exampleSet, com.rapidminer.operator.learner.functions.kernel.gaussianprocess.Model model) { super(exampleSet, ExampleSetUtilities.SetsCompareOption.ALLOW_SUPERSET, ExampleSetUtilities.TypesCompareOption.ALLOW_SAME_PARENTS); this.model = model; } @Override public boolean isClassificationModel() { return getLabel().isNominal(); } @Override public double getBias() { return 0; } @Override public SupportVector getSupportVector(int index) { return null; } @Override public double getAlpha(int index) { return Double.NaN; } @Override public String getId(int index) { return null; } @Override public int getNumberOfSupportVectors() { return this.model.getNumberOfBasisVectors(); } @Override public int getNumberOfAttributes() { return this.model.getInputDim(); } @Override public double getAttributeValue(int exampleIndex, int attributeIndex) { return this.model.getBasisVectorValue(exampleIndex, attributeIndex); } @Override public String getClassificationLabel(int index) { return "?"; } @Override public double getRegressionLabel(int index) { return Double.NaN; } @Override public double getFunctionValue(int index) { return model.applyToVector(this.model.getBasisVector(index)); } @Override public ExampleSet performPrediction(ExampleSet exampleSet, Attribute predictedLabel) throws OperatorException { Iterator<Example> i = exampleSet.iterator(); OperatorProgress progress = null; if (getShowProgress() && getOperator() != null && getOperator().getProgress() != null) { progress = getOperator().getProgress(); progress.setTotal(exampleSet.size()); } int progressCounter = 0; while (i.hasNext()) { Example e = i.next(); double functionValue = model.applyToVector(RVMModel.makeInputVector(e)); if (getLabel().isNominal()) { if (functionValue > 0) { e.setValue(predictedLabel, getLabel().getMapping().getPositiveIndex()); } else { e.setValue(predictedLabel, getLabel().getMapping().getNegativeIndex()); } // set confidence to numerical prediction, such that can be scaled later e.setConfidence(predictedLabel.getMapping().getPositiveString(), 1.0d / (1.0d + java.lang.Math.exp(-functionValue))); e.setConfidence(predictedLabel.getMapping().getNegativeString(), 1.0d / (1.0d + java.lang.Math.exp(functionValue))); } else { e.setValue(predictedLabel, functionValue); } if (progress != null && ++progressCounter % OPERATOR_PROGRESS_STEPS == 0) { progress.setCompleted(progressCounter); } } return exampleSet; } }