EGCompara.java example

/*
 * Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
 * Copyright [2016-2017] EMBL-European Bioinformatics Institute
 * 
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 * 
 *      http://www.apache.org/licenses/LICENSE-2.0
 * 
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */

package org.ensembl.healthcheck.testgroup;

import org.ensembl.healthcheck.GroupOfTests;
import org.ensembl.healthcheck.testcase.compara.ForeignKeyGenomicAlignmentTables;
import org.ensembl.healthcheck.testcase.compara.CheckMLSSIDConsistencyInGenomicAlign;
import org.ensembl.healthcheck.testcase.compara.ForeignKeyMemberTables;
import org.ensembl.healthcheck.testcase.compara.ForeignKeyMLSSIdGenomic;
import org.ensembl.healthcheck.testcase.compara.ForeignKeySpeciesTreeTables;
import org.ensembl.healthcheck.testcase.compara.ForeignKeySyntenyTables;
import org.ensembl.healthcheck.testcase.compara.MultipleGenomicAlignBlockIds;
import org.ensembl.healthcheck.testcase.eg_compara.EGCheckEmptyLocators;
import org.ensembl.healthcheck.testcase.eg_compara.EGCheckNoTreeStableIds;
import org.ensembl.healthcheck.testcase.eg_compara.EGCheckSynteny;
import org.ensembl.healthcheck.testcase.eg_compara.EGMethodLinkSpeciesSetIdStats;
import org.ensembl.healthcheck.testcase.eg_compara.EGMethodLinkSpeciesSetIdSyntenyStats;
import org.ensembl.healthcheck.testcase.compara.MemberProductionCounts;
import org.ensembl.healthcheck.testcase.eg_compara.MemberXrefAssociation;

/**
 * Group of tests for EnsemblGenomes compara databases
 * 
 * @author dstaines
 * 
 */
public class EGCompara extends GroupOfTests {

	public EGCompara() {

		setDescription("Group of tests for EnsemblGenomes compara databases.");

		addTest(
				EGCommon.class, 
				EGComparaGeneTree.class, 
				EGCheckSynteny.class,
				EGMethodLinkSpeciesSetIdStats.class,
				EGMethodLinkSpeciesSetIdSyntenyStats.class,
				EGCheckNoTreeStableIds.class,
				ForeignKeyGenomicAlignmentTables.class, 
				CheckMLSSIDConsistencyInGenomicAlign.class,
				ForeignKeyMemberTables.class,
				ForeignKeyMLSSIdGenomic.class,
				ForeignKeySpeciesTreeTables.class,
				ForeignKeySyntenyTables.class,
				EGCheckEmptyLocators.class,
				MemberXrefAssociation.class, MemberProductionCounts.class,
				MultipleGenomicAlignBlockIds.class,
				ControlledComparaTables.class
		);
	}
}