/*
* Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
* Copyright [2016-2017] EMBL-European Bioinformatics Institute
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
/**
* File: EgMeta.java
* Created by: dstaines
* Created on: Mar 2, 2010
* CVS: $$
*/
package org.ensembl.healthcheck.testcase.eg_core;
import java.util.List;
import java.util.Map;
import java.util.Map.Entry;
import org.ensembl.healthcheck.DatabaseRegistryEntry;
import org.ensembl.healthcheck.ReportManager;
import org.ensembl.healthcheck.util.TestCaseUtils;
/**
* @author dstaines
*
*/
public class DeprecatedEgMeta extends AbstractEgMeta {
/**
* Default constructor
*/
public DeprecatedEgMeta() {
super(
TestCaseUtils
.resourceToStringList("/org/ensembl/healthcheck/testcase/eg_core/deprecated_meta_keys.txt"));
}
@Override
protected boolean testKeys(DatabaseRegistryEntry dbre, int speciesId,
List<String> speciesKeys, List<String> testKeys) {
boolean passes = true;
for(String key: speciesKeys) {
if(testKeys.contains(key)) {
passes = false;
ReportManager.problem(this, dbre.getConnection(),
"Meta table for " + speciesId
+ " contains a value for the deprecated key " + key);
}
}
return passes;
}
/* (non-Javadoc)
* @see org.ensembl.healthcheck.testcase.AbstractTemplatedTestCase#getEgDescription()
*/
@Override
protected String getEgDescription() {
return "Checks for deprecated meta keys";
}
}