DuplicateTopLevel.java

/*
 * Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
 * Copyright [2016-2017] EMBL-European Bioinformatics Institute
 * 
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 * 
 *      http://www.apache.org/licenses/LICENSE-2.0
 * 
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */

/**
 * File: GeneDescriptionSourceTest.java
 * Created by: dstaines
 * Created on: May 26, 2009
 * CVS:  $$
 */
package org.ensembl.healthcheck.testcase.eg_core;

import org.ensembl.healthcheck.DatabaseType;
import org.ensembl.healthcheck.Team;
import org.ensembl.healthcheck.testcase.AbstractRowCountTestCase;

/**
 * Test to see if we have more than one seq_region_attrib
 * 
 * @author dstaines
 * 
 */
public class DuplicateTopLevel extends AbstractRowCountTestCase {

	public DuplicateTopLevel() {
		super();
		this.addToGroup(AbstractEgCoreTestCase.EG_GROUP);
		this.appliesToType(DatabaseType.CORE);
		this.setTeamResponsible(Team.ENSEMBL_GENOMES);
		this.setDescription("Test to see if we have more than one seq_region_attrib");
	}

	private final static String QUERY = "select count(*) from (select count(*) as c "
			+ "from seq_region_attrib join attrib_type using (attrib_type_id) "
			+ "where code='toplevel' group by seq_region_id,attrib_type_id having count(*)>1) as a";

	/*
	 * (non-Javadoc)
	 * 
	 * @see
	 * org.ensembl.healthcheck.testcase.AbstractRowCountTestCase#getExpectedCount
	 * ()
	 */
	@Override
	protected int getExpectedCount() {
		return 0;
	}

	/*
	 * (non-Javadoc)
	 * 
	 * @see org.ensembl.healthcheck.testcase.AbstractIntegerTestCase#getSql()
	 */
	@Override
	protected String getSql() {
		return QUERY;
	}

	@Override
	protected String getErrorMessage(int count) {
		return count+" seq regions found with duplicate top level attribs";
	}


}