/*
* Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
* Copyright [2016-2017] EMBL-European Bioinformatics Institute
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package org.ensembl.healthcheck.testcase.generic;
/*
* Copyright (C) 2003 EBI, GRL
*
* This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation; either version 2.1 of the License, or (at your option) any later version.
*
* This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
* FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public License along with this library; if not, write to the Free Software Foundation,
* Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*/
import java.sql.Connection;
import org.ensembl.healthcheck.util.DBUtils;
import org.ensembl.healthcheck.DatabaseRegistryEntry;
import org.ensembl.healthcheck.ReportManager;
import org.ensembl.healthcheck.Team;
import org.ensembl.healthcheck.testcase.SingleDatabaseTestCase;
/**
* Check that there are no blank db_display_name fields in external_db.
*/
public class ExternalDBDisplayName extends SingleDatabaseTestCase {
/**
* Create a new PredictedXrefs testcase.
*/
public ExternalDBDisplayName() {
setDescription("Check that there are no blank db_display_name fields in external_db");
setTeamResponsible(Team.GENEBUILD);
}
/**
* Run the test.
*
* @param dbre
* The database to use.
* @return true if the test passed.
*
*/
public boolean run(DatabaseRegistryEntry dbre) {
boolean result = true;
Connection con = dbre.getConnection();
int rows = DBUtils.getRowCount(con, "SELECT COUNT(*) FROM external_db WHERE db_display_name IS NULL OR db_display_name LIKE ' %'");
if (rows > 0) {
ReportManager.problem(this, con, rows + " rows in external_db have null or blank db_display_name - this will mean their label is missing on the web page");
result = false;
} else {
ReportManager.correct(this, con, "No blank db_display_name fields in external_db");
}
return result;
} // run
// ----------------------------------------------------------------------
} // ExternalDBDisplayName