/*
* Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
* Copyright [2016-2017] EMBL-European Bioinformatics Institute
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package org.ensembl.healthcheck.testgroup;
import org.ensembl.healthcheck.GroupOfTests;
/**
* Healthchecks for the genomic Compara databases
* (and only this kind of database)
*/
public class ComparaGenomicOnly extends GroupOfTests {
public ComparaGenomicOnly() {
addTest(
org.ensembl.healthcheck.testcase.compara.CheckConservationScore.class,
org.ensembl.healthcheck.testcase.compara.CheckConstrainedElementTable.class,
org.ensembl.healthcheck.testcase.compara.CheckGenomicAlignGenomeDBs.class,
org.ensembl.healthcheck.testcase.compara.CheckGenomicAlignTreeTable.class,
org.ensembl.healthcheck.testcase.compara.CheckMLSSIDConsistencyInGenomicAlign.class,
org.ensembl.healthcheck.testcase.compara.CheckPairAlignerUniqueMethod.class,
org.ensembl.healthcheck.testcase.compara.CheckMSANames.class,
org.ensembl.healthcheck.testcase.compara.CheckSynteny.class,
org.ensembl.healthcheck.testcase.compara.ForeignKeyConservationTables.class,
org.ensembl.healthcheck.testcase.compara.ForeignKeyGenomicAlignmentTables.class,
org.ensembl.healthcheck.testcase.compara.ForeignKeyMLSSIdGenomic.class,
org.ensembl.healthcheck.testcase.compara.ForeignKeySyntenyTables.class,
org.ensembl.healthcheck.testcase.compara.MLSSTagGERPMSA.class,
org.ensembl.healthcheck.testcase.compara.MLSSTagHighCoverageMSA.class,
org.ensembl.healthcheck.testcase.compara.MLSSTagMaxAlign.class,
org.ensembl.healthcheck.testcase.compara.MLSSTagStatsMultipleAlignment.class,
org.ensembl.healthcheck.testcase.compara.MLSSTagStatsPairwiseAlignment.class,
org.ensembl.healthcheck.testcase.compara.MLSSTagStatsSynteny.class,
org.ensembl.healthcheck.testcase.compara.MultipleGenomicAlignBlockIds.class
);
}
}