/* * Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute * Copyright [2016-2017] EMBL-European Bioinformatics Institute * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. */ package org.ensembl.healthcheck.testcase.compara; import java.util.HashMap; import org.ensembl.healthcheck.testcase.compara.AbstractMLSSTagStats; public class MLSSTagStatsMultipleAlignment extends AbstractMLSSTagStats { protected HashMap<String,String[]> getMandatoryTags() { HashMap<String,String[]> mandatoryTags = new HashMap<String,String[]>(); String[] tags_multiple_alignments = { "num_blocks", "max_align" }; mandatoryTags.put("EPO", tags_multiple_alignments); mandatoryTags.put("PECAN", tags_multiple_alignments); mandatoryTags.put("EPO_LOW_COVERAGE", tags_multiple_alignments); // We don't include "high_coverage_mlss_id" because it is checked by another HC return mandatoryTags; } }