/*
* Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
* Copyright [2016-2017] EMBL-European Bioinformatics Institute
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
/*
* Copyright (C) 2003 EBI, GRL
*
* This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation; either version 2.1 of the License, or (at your option) any later version.
*
* This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
* FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public License along with this library; if not, write to the Free Software Foundation,
* Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*/
package org.ensembl.healthcheck.testcase.variation;
import java.util.Map;
import org.ensembl.healthcheck.DatabaseRegistryEntry;
import org.ensembl.healthcheck.Team;
import org.ensembl.healthcheck.testcase.generic.ComparePreviousVersionBase;
/**
* Compare the number of alleles between the current database and the database on the secondary server.
*/
public class ComparePreviousVersionAlleles extends ComparePreviousVersionBase {
/**
* Create a new testcase.
*/
public ComparePreviousVersionAlleles() {
addToGroup("variation-release");
setDescription("Compare the number of alleles in the current database with those from the equivalent database on the secondary server");
setTeamResponsible(Team.VARIATION);
}
protected Map getCounts(DatabaseRegistryEntry dbre) {
return getCountsBySQL(dbre, "SELECT 'alleles', COUNT(*) FROM allele");
}
// ------------------------------------------------------------------------
protected String entityDescription() {
return "number of";
}
// ------------------------------------------------------------------------
protected double threshold() {
return 1;
}
// ------------------------------------------------------------------------
protected double minimum() {
return 0;
}
// ------------------------------------------------------------------------
} // ComparePreviousVersionAlleles