/*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program; if not, write to the Free Software
* Foundation, Inc., 675 Mass Ave, Cambridge, MA 02139, USA.
*/
/*
* Copyright (C) 2007 University of Waikato, Hamilton, New Zealand
*/
package weka.filters.unsupervised.attribute;
import weka.core.Attribute;
import weka.core.Instances;
import weka.filters.AbstractFilterTest;
import weka.filters.Filter;
import junit.framework.Test;
import junit.framework.TestSuite;
import junit.textui.TestRunner;
/**
* Tests PrincipalComponents. Run from the command line with: <p/>
* java weka.filters.unsupervised.attribute.PrincipalComponentsTest
*
* @author FracPete (fracpete at waikato dot ac dot nz)
* @version $Revision: 6693 $
*/
public class PrincipalComponentsTest
extends AbstractFilterTest {
/**
* Initializes the test.
*
* @param name the name of the test
*/
public PrincipalComponentsTest(String name) {
super(name);
}
/**
* Need to remove non-numeric attributes.
*
* @throws Exception if something goes wrong in setup
*/
protected void setUp() throws Exception {
super.setUp();
m_Instances.deleteAttributeType(Attribute.STRING);
// class index
m_Instances.setClassIndex(1);
}
/**
* Creates a default PrincipalComponents filter.
*
* @return the default filter
*/
public Filter getFilter() {
return new PrincipalComponents();
}
/**
* performs the actual test.
*/
protected void performTest() {
Instances icopy = new Instances(m_Instances);
Instances result = null;
try {
m_Filter.setInputFormat(icopy);
}
catch (Exception ex) {
ex.printStackTrace();
fail("Exception thrown on setInputFormat(): \n" + ex.getMessage());
}
try {
result = Filter.useFilter(icopy, m_Filter);
assertNotNull(result);
}
catch (Exception ex) {
ex.printStackTrace();
fail("Exception thrown on useFilter(): \n" + ex.getMessage());
}
assertEquals(icopy.numInstances(), result.numInstances());
}
/**
* Only tests whether the number of instances stay the same, with default
* setup of filter.
*/
public void testTypical() {
m_Filter = getFilter();
performTest();
}
/**
* Runs filter with covariance matrix + centering rather than correlation
* + standardizing.
*/
public void testCovariance() {
m_Filter = getFilter();
((PrincipalComponents) m_Filter).setCenterData(true);
performTest();
}
/**
* Runs filter with different variance.
*/
public void testVariance() {
m_Filter = getFilter();
((PrincipalComponents) m_Filter).setVarianceCovered(0.8);
performTest();
}
/**
* Runs filter with a maximum number of attributes.
*/
public void testMaxAttributes() {
m_Filter = getFilter();
((PrincipalComponents) m_Filter).setMaximumAttributeNames(2);
performTest();
}
/**
* Returns a configures test suite.
*
* @return a configured test suite
*/
public static Test suite() {
return new TestSuite(PrincipalComponentsTest.class);
}
/**
* For running the test from commandline.
*
* @param args ignored
*/
public static void main(String[] args){
TestRunner.run(suite());
}
}