/*
* Encog(tm) Core v3.4 - Java Version
* http://www.heatonresearch.com/encog/
* https://github.com/encog/encog-java-core
* Copyright 2008-2016 Heaton Research, Inc.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
* For more information on Heaton Research copyrights, licenses
* and trademarks visit:
* http://www.heatonresearch.com/copyright
*/
package org.encog.ml.prg.species;
import org.encog.ml.ea.genome.Genome;
import org.encog.ml.ea.species.ThresholdSpeciation;
import org.encog.ml.prg.EncogProgram;
/**
* Perform speciation for two Encog programs. This is a threshold based
* speciation, similar to that used for NEAT. Any genomes with a compatibility
* score below a specified threshold will be in the same species.
*/
public class PrgSpeciation extends ThresholdSpeciation {
/**
* The serial ID.
*/
private static final long serialVersionUID = 1L;
public PrgSpeciation() {
setCompatibilityThreshold(15);
setMaxNumberOfSpecies(30);
setNumGensAllowedNoImprovement(15);
}
/**
* {@inheritDoc}
*/
@Override
public double getCompatibilityScore(final Genome genome1,
final Genome genome2) {
final CompareEncogProgram comp = new CompareEncogProgram();
final double d = comp.compare((EncogProgram) genome1,
(EncogProgram) genome2);
return d;
}
}