PositionsToPointerFileSequence.java

package aliview.sequences;

import org.apache.log4j.Logger;

import aliview.importer.ClustalFileIndexer;
import aliview.sequencelist.MemoryMappedSequencesFile;

public class PositionsToPointerFileSequence extends FileSequence {
	private static final Logger logger = Logger.getLogger(PositionsToPointerFileSequence.class);
	
	public PositionsToPointerFileSequence(MemoryMappedSequencesFile sequencesFile,long startPointer){
		super(new PositionsToPointerFileSequenceBases(sequencesFile, startPointer));
	}
	
	public void add(PositionToPointer posToPoint){
		PositionsToPointerFileSequenceBases fileSeqBases = (PositionsToPointerFileSequenceBases) getNonTranslatedBases();
		fileSeqBases.add(posToPoint);
	}
}