PrimerResultsFrame.java

package aliview.primer;

import java.awt.BorderLayout;
import java.awt.Component;
import java.awt.Dimension;
import java.awt.event.MouseAdapter;
import java.awt.event.MouseEvent;
import java.util.ArrayList;
import java.util.Enumeration;

import javax.swing.JFrame;
import javax.swing.JPanel;
import javax.swing.JScrollPane;
import javax.swing.JTable;
import javax.swing.ListSelectionModel;
import javax.swing.event.ListSelectionEvent;
import javax.swing.event.ListSelectionListener;
import javax.swing.table.DefaultTableModel;
import javax.swing.table.TableColumn;

import org.apache.log4j.Logger;

import aliview.AliViewWindow;
import aliview.gui.AppIcons;

public class PrimerResultsFrame extends JFrame {
	private static final Logger logger = Logger.getLogger(PrimerResultsFrame.class);
	private static final int MAX_NUMBER_OF_PRIMERS_REPORTED = 1000;
	JPanel mainPanel = new JPanel();
	private final AliViewWindow aliViewWindow;
	JTable mainTable;
	PrimerDetailFrame primerDetailFrame;
	private ArrayList<Primer> primerResult;
	
	public PrimerResultsFrame(ArrayList<Primer> primRes,AliViewWindow aliViewWin){
		this.aliViewWindow = aliViewWin;
		this.primerResult = primRes;
			
			DefaultTableModel tm = new DefaultTableModel(PrimerResultTableRow.getColumnHeaders().toArray(),0);
			
			mainTable = new JTable(tm);
			mainTable.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
			mainTable.setRowHeight(44);
			//mainTable.setDefaultRenderer(PrimerPanel.class, new PrimerPanelCellRenderer());
			mainTable.getSelectionModel().addListSelectionListener(new ListSelectionListener() {
				
				    public void valueChanged(ListSelectionEvent e) {
				        // If cell selection is enabled, both row and column change events are fired
				        if (e.getValueIsAdjusting()) {
				            // The mouse button has not yet been released
				        }
				        else{
				        	displaySelectedPrimerDetailWindow();
				        }
				    }
	
			});	
			
			mainTable.addMouseListener(new MouseAdapter() {
				@Override
				public void mouseClicked(MouseEvent e) {
					if(e.getButton() == e.BUTTON3){
						logger.info("copy Primer To clipboard");
						
						int colIndex = 0;
						if(mainTable.getSelectedColumn() == colIndex){
				        	PrimerPanel selected = (PrimerPanel) mainTable.getModel().getValueAt(mainTable.getSelectedRow(),0);   	
				        	String data = selected.getPrimer().getPrimerDetailsAsText();
				        	
				        	System.out.println(data);
						}
					}
					// always display window
					displaySelectedPrimerDetailWindow();
	
				}
				
			});
			
			Enumeration<TableColumn> enu = mainTable.getColumnModel().getColumns();
			while(enu.hasMoreElements()) {
				TableColumn col = enu.nextElement();
				col.setCellRenderer(new ComponentCellRenderer());
				col.setCellEditor(new ComponentCellRenderer());
			}
			
			for(int n = 0; n < mainTable.getColumnModel().getColumnCount(); n++){
				 mainTable.getColumnModel().getColumn(n).setPreferredWidth(PrimerResultTableRow.getColumnSizes().get(n));
			}
	
			JScrollPane scrollPane = new JScrollPane(mainTable, JScrollPane.VERTICAL_SCROLLBAR_AS_NEEDED, JScrollPane.HORIZONTAL_SCROLLBAR_AS_NEEDED);
			getContentPane().add(scrollPane, BorderLayout.CENTER);
			
			int nCount = 0;
			for(Primer primer: primRes){
				if(primer.getScore() <= 1000 && nCount < MAX_NUMBER_OF_PRIMERS_REPORTED){
					//logger.info("AddingPanel");
					//tm.addRow(new Object[]{new PrimerPanel(primer)});
					//logger.info("AddingRow");
					tm.addRow( new PrimerResultTableRow(primer).getRow().toArray() );
					nCount ++;
					
				}
			}

		
		this.setTitle("Primer finds");
		this.setIconImage(AppIcons.getProgramIconImage());
		this.setPreferredSize(new Dimension(700,400));
		this.placeFrameupperLeftLocationOfThis(aliViewWin);
		this.pack();
		this.setVisible(true);
			
	}
	
	public void placeFrameupperLeftLocationOfThis(Component parent){
		if(parent != null){
			int newX = parent.getX() + 100;
			int newY = parent.getY() + 100;
			this.setLocation(newX, newY);
		}
	}	

	protected void displaySelectedPrimerDetailWindow() {
		int colIndex = 0;	  
    	int rowIndex = mainTable.getSelectedRow();    	
    	Primer selectedPrimer = primerResult.get(rowIndex);     	
    	
    	//PrimerPanel selected = (PrimerPanel) mainTable.getModel().getValueAt(mainTable.getSelectedRow(),0);
    	
    	// find primer in alignment
    	aliViewWindow.performFind(selectedPrimer.getSequence());
    	
    	// show detail in new frame 	
    	String data = selectedPrimer.getPrimerDetailsAsText();
    	
    	if(primerDetailFrame == null){
    		primerDetailFrame = new PrimerDetailFrame(aliViewWindow);
    	}
    	primerDetailFrame.setText(data);
    	primerDetailFrame.setVisible(true);
	}

	@Override
	public void dispose() {
		super.dispose();
		if(primerDetailFrame != null){
			primerDetailFrame.dispose();
		}
	}
	
	
	
	
}