CmdItemPanel.java

package aliview.externalcommands;

import java.awt.Dimension;
import java.awt.GridBagConstraints;
import java.awt.GridBagLayout;
import java.awt.Insets;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.awt.event.FocusEvent;
import java.awt.event.FocusListener;
import java.io.File;
import java.io.IOException;

import javax.swing.JButton;
import javax.swing.JFileChooser;
import javax.swing.JLabel;
import javax.swing.JPanel;
import javax.swing.JRadioButton;
import javax.swing.JTextArea;
import javax.swing.JTextField;
import javax.swing.SwingConstants;
import javax.swing.UIManager;
import javax.swing.border.BevelBorder;
import javax.swing.border.EmptyBorder;
import javax.swing.event.ChangeEvent;
import javax.swing.event.ChangeListener;

import utils.FileUtilities;

import aliview.AliViewWindow;
import aliview.externalcommands.CommandItem;
import aliview.settings.Settings;
import javax.swing.JCheckBox;

public class CmdItemPanel extends JPanel{
	
	JCheckBox cbxIsActivated;

public CmdItemPanel(final CommandItem cmdItem){
	
    final JPanel aliItemPanel = this;
  //  this.setPreferredSize(new Dimension(650, 100));
    
	aliItemPanel.setBorder(new EmptyBorder(5, 5, 5, 5));
	GridBagLayout gbl_aliItemPanel = new GridBagLayout();
	gbl_aliItemPanel.columnWidths = new int[] {0, 140, 100, 100};
	gbl_aliItemPanel.rowHeights = new int[] {30, 25, 30};
	gbl_aliItemPanel.columnWeights = new double[]{0.0, 0.0, 1.0, 1.0};
	gbl_aliItemPanel.rowWeights = new double[]{0.0, 1.0, 1.0};
	aliItemPanel.setLayout(gbl_aliItemPanel);
	
	JLabel lblItemName = new JLabel("Display name:");
	lblItemName.setHorizontalAlignment(SwingConstants.LEFT);
	GridBagConstraints gbc_lblItemName = new GridBagConstraints();
	gbc_lblItemName.anchor = GridBagConstraints.WEST;
	gbc_lblItemName.insets = new Insets(0, 0, 5, 5);
	gbc_lblItemName.gridx = 1;
	gbc_lblItemName.gridy = 0;
	add(lblItemName, gbc_lblItemName);
	
	JTextField txtCommandName = new JTextField();
	txtCommandName.setText("mafft");
	GridBagConstraints gbc_txtCommandName = new GridBagConstraints();
	gbc_txtCommandName.anchor = GridBagConstraints.NORTH;
	gbc_txtCommandName.insets = new Insets(0, 0, 5, 5);
	gbc_txtCommandName.fill = GridBagConstraints.HORIZONTAL;
	gbc_txtCommandName.gridx = 1;
	gbc_txtCommandName.gridy = 1;
	aliItemPanel.add(txtCommandName, gbc_txtCommandName);
	txtCommandName.setColumns(10);
	txtCommandName.addFocusListener(new FocusListener() {		
		public void focusLost(FocusEvent e) {
			JTextField txt = (JTextField) e.getSource();
			cmdItem.setName(txt.getText());
			//alignItem.getAddAlignCmd().setName(txt.getText());
		}
		public void focusGained(FocusEvent e) {
		}
	});
	txtCommandName.setText(cmdItem.getName());
	
	
	
	JLabel lblCommand = new JLabel("Command:");
	GridBagConstraints gbc_lblCommand = new GridBagConstraints();
	gbc_lblCommand.anchor = GridBagConstraints.WEST;
	gbc_lblCommand.insets = new Insets(0, 0, 5, 5);
	gbc_lblCommand.gridx = 2;
	gbc_lblCommand.gridy = 0;
	add(lblCommand, gbc_lblCommand);
	
	JTextArea txtCommand = new JTextArea();
	txtCommand.setLineWrap(true);
	txtCommand.setBorder(new BevelBorder(BevelBorder.LOWERED, null, null, null, null));
	txtCommand.setRows(2);
	GridBagConstraints gbc_txtCommand = new GridBagConstraints();
	gbc_txtCommand.gridwidth = 2;
	gbc_txtCommand.gridheight = 2;
	gbc_txtCommand.fill = GridBagConstraints.BOTH;
	gbc_txtCommand.gridx = 2;
	gbc_txtCommand.gridy = 1;
	aliItemPanel.add(txtCommand, gbc_txtCommand);
	txtCommand.setColumns(10);
	txtCommand.addFocusListener(new FocusListener() {		
		public void focusLost(FocusEvent e){
			JTextArea txt = (JTextArea) e.getSource();
			cmdItem.setCommand(txt.getText());
		}
		public void focusGained(FocusEvent e) {
		}
	});
	txtCommand.setText(cmdItem.getCommand());
	
	
	
	JCheckBox chckbxShowCmdOutput = new JCheckBox("Show command window output");
	GridBagConstraints gbc_chckbxShowCmdOutput = new GridBagConstraints();
	gbc_chckbxShowCmdOutput.anchor = GridBagConstraints.EAST;
	gbc_chckbxShowCmdOutput.insets = new Insets(0, 0, 5, 0);
	gbc_chckbxShowCmdOutput.gridx = 3;
	gbc_chckbxShowCmdOutput.gridy = 0;
	add(chckbxShowCmdOutput, gbc_chckbxShowCmdOutput);
	chckbxShowCmdOutput.setSelected(cmdItem.isShowCommandWindow());
	chckbxShowCmdOutput.addActionListener(new ActionListener() {
		public void actionPerformed(ActionEvent e) {
			JCheckBox cbx = (JCheckBox) e.getSource();
			cmdItem.setShowCommandWindow(cbx.isSelected());
		}
	});
	
	
	cbxIsActivated = new JCheckBox("");
	GridBagConstraints gbc_cbxIsActivated = new GridBagConstraints();
	gbc_cbxIsActivated.fill = GridBagConstraints.VERTICAL;
	gbc_cbxIsActivated.insets = new Insets(0, 0, 5, 5);
	gbc_cbxIsActivated.gridx = 0;
	gbc_cbxIsActivated.gridy = 1;
	aliItemPanel.add(cbxIsActivated, gbc_cbxIsActivated);
	cbxIsActivated.setSelected(cmdItem.isActivated());
	cbxIsActivated.addActionListener(new ActionListener() {
		public void actionPerformed(ActionEvent e) {
			JCheckBox cbx = (JCheckBox) e.getSource();
			cmdItem.setActivated(cbx.isSelected());
		}
	});
	
	/*
	JButton btnTest = new JButton("Test");
	GridBagConstraints gbc_btnTest = new GridBagConstraints();
	gbc_btnTest.insets = new Insets(0, 0, 0, 5);
	gbc_btnTest.gridx = 1;
	gbc_btnTest.gridy = 2;
	add(btnTest, gbc_btnTest);
	*/
	
	/*
	JButton btnBrowseProgram = new JButton("Browse");
	btnBrowseProgram.setPreferredSize(new Dimension(100,25));
	GridBagConstraints gbc_btnBrowseProgram = new GridBagConstraints();
	gbc_btnBrowseProgram.anchor = GridBagConstraints.SOUTHEAST;
	gbc_btnBrowseProgram.gridheight = 3;
	gbc_btnBrowseProgram.insets = new Insets(0, 0, 0, 5);
	gbc_btnBrowseProgram.gridx = 1;
	gbc_btnBrowseProgram.gridy = 2;
	add(btnBrowseProgram, gbc_btnBrowseProgram);
	btnBrowseProgram.addActionListener(new ActionListener() {
		public void actionPerformed(ActionEvent e){
			String suggestedDir = Settings.getExternalCommandFileDirectory();
			File suggestedFile = new File(suggestedDir);
			File selectedFile = FileUtilities.selectOpenFileViaChooser(suggestedFile,aliItemPanel);
			if(selectedFile != null){
		//		txtProgramFile.setText(selectedFile.getAbsolutePath());
		//		alignItem.setProgramPath(selectedFile.getAbsolutePath());
		//		Settings.putExternalCommandFileDirectory(selectedFile.getAbsolutePath());	
			}
		}
	});
	*/
}

public JCheckBox getCbxIsActivated() {
	return cbxIsActivated;
}

}