AlignmentPopupMenu.java

package aliview.gui;

import java.awt.Point;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.awt.event.MouseAdapter;
import java.awt.event.MouseEvent;
import java.awt.event.MouseListener;

import javax.swing.JMenuItem;
import javax.swing.JPopupMenu;
import javax.swing.JSeparator;

import aliview.AliViewWindow;


public class AlignmentPopupMenu extends JPopupMenu implements MouseListener {

		private AliViewWindow aliViewWin;
		private AliViewJMenuBar aliViewMenuBar;
		private MouseEvent mouseActivationEvent;

		public AlignmentPopupMenu(final AliViewWindow aliViewWin, final AliViewJMenuBar aliViewMenuBar){
			this.aliViewWin = aliViewWin;
			this.aliViewMenuBar = aliViewMenuBar;
			
			JMenuItem setTraceSeq = new JMenuItem("Set this sequence as template when Highlighting difference");
			setTraceSeq.addActionListener(new ActionListener() {		
				public void actionPerformed(ActionEvent e) {
					aliViewWin.setDifferenceTraceSequence(mouseActivationEvent.getPoint());
				}
			});
			add(setTraceSeq);
			
			add(new JSeparator());
			
			JMenuItem copyItem = new JMenuItem("Copy (as fasta)");
			copyItem.setModel(aliViewMenuBar.getCopyAsFastaButtonModel());
			add(copyItem);

			JMenuItem copyNucItem = new JMenuItem("Copy (the characters only)");		
			copyNucItem.setModel(aliViewMenuBar.getCopyAsCharactersButtonModel());
			add(copyNucItem);
			
			JMenuItem copyNameItem = new JMenuItem("Copy name(s) only");		
			copyNameItem.setModel(aliViewMenuBar.getCopyNameButtonModel());
			add(copyNameItem);
			
			JMenuItem pasteItem = new JMenuItem("Paste sequence(s) from clipboard");	
			pasteItem.setModel(aliViewMenuBar.getPasteAsFastaButtonModel());
			add(pasteItem);
			
			JMenuItem addEmptyItem = new JMenuItem("Add new empty sequence");	
			addEmptyItem.setModel(aliViewMenuBar.getAddNewSequenceButtonModel());
			add(addEmptyItem);
			
				
			add(new JSeparator());
			
			JMenuItem renameItem = new JMenuItem("Rename sequence");
			renameItem.setModel(aliViewMenuBar.getRenameButtonModel());
			add(renameItem);
				
			add(new JSeparator());
			
			JMenuItem alignBlock = new JMenuItem("Realign selected block");
			alignBlock.setModel(aliViewMenuBar.getRealignSelectedBlock());
			add(alignBlock);
			
			JMenuItem alignSelectedSeq = new JMenuItem("Realign selected sequence(s)");
			alignSelectedSeq.setModel(aliViewMenuBar.getRealignSelectedSequences());
			add(alignSelectedSeq);
			
			//add(new JSeparator());
			/*
			JMenuItem renameSeqItem = new JMenuItem("Rename sequence");
			renameSeqItem.addActionListener(new ActionListener() {		
				public void actionPerformed(ActionEvent e) {
					TextEditDialog editDialog = new TextEditDialog();
					editDialog.showOKCancelTextEditor("this is seq", TextEditDialog.EDIT_SEQUENCE_NAME, aliViewWindow);
					logger.info("done");
					
				}
			});
			add(renameSeqItem);
			*/

		}
		
		/*
		 * 
		 * The mouse listener
		 * 
		 */
			
		public void mousePressed(MouseEvent e){
			if (e.isPopupTrigger())
				showPopupMenu(e);
		}

		public void mouseReleased(MouseEvent e){
			if (e.isPopupTrigger())
				showPopupMenu(e);
		}

		private void showPopupMenu(MouseEvent e){
			mouseActivationEvent = e;
			this.show(e.getComponent(), e.getX(), e.getY());
		}


		public void mouseClicked(MouseEvent e) {
			// TODO Auto-generated method stub
		}


		public void mouseEntered(MouseEvent e) {
			// TODO Auto-generated method stub		
		}


		public void mouseExited(MouseEvent e) {
			// TODO Auto-generated method stub
		}
}