/* * RapidMiner * * Copyright (C) 2001-2011 by Rapid-I and the contributors * * Complete list of developers available at our web site: * * http://rapid-i.com * * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU Affero General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Affero General Public License for more details. * * You should have received a copy of the GNU Affero General Public License * along with this program. If not, see http://www.gnu.org/licenses/. */ package com.rapidminer.tools.math.similarity.numerical; import com.rapidminer.example.ExampleSet; import com.rapidminer.example.Tools; import com.rapidminer.operator.OperatorException; import com.rapidminer.parameter.ParameterHandler; import com.rapidminer.tools.math.kernels.Kernel; import com.rapidminer.tools.math.similarity.DistanceMeasure; /** * This class uses the approach of Schoelkopf (2001) The Kernel Trick for Distances. * It hence calculates the distances between two examples in the transformed space defined by * the chosen kernel. * @author Sebastian Land */ public class KernelEuclideanDistance extends DistanceMeasure { private static final long serialVersionUID = 6764039884618489619L; private Kernel kernel; @Override public double calculateDistance(double[] value1, double[] value2) { return kernel.calculateDistance(value1, value1) + kernel.calculateDistance(value2, value2) -2 * kernel.calculateDistance(value1, value2); } @Override public double calculateSimilarity(double[] value1, double[] value2) { return -calculateDistance(value1, value2); } @Override public void init(ExampleSet exampleSet) throws OperatorException { super.init(exampleSet); Tools.onlyNumericalAttributes(exampleSet, "value based similarities"); } public void init(ParameterHandler handler) throws OperatorException { kernel = Kernel.createKernel(handler); } @Override public String toString() { return "Kernelspace euclidean distance"; } }