/* * RapidMiner * * Copyright (C) 2001-2011 by Rapid-I and the contributors * * Complete list of developers available at our web site: * * http://rapid-i.com * * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU Affero General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Affero General Public License for more details. * * You should have received a copy of the GNU Affero General Public License * along with this program. If not, see http://www.gnu.org/licenses/. */ package com.rapidminer.tools.math.similarity.divergences; import com.rapidminer.example.Attribute; import com.rapidminer.example.Attributes; import com.rapidminer.example.Example; import com.rapidminer.example.ExampleSet; import com.rapidminer.example.Tools; import com.rapidminer.operator.OperatorException; import com.rapidminer.tools.math.similarity.BregmanDivergence; /** * The "Generalized I-divergence ". * * @author Regina Fritsch */ public class GeneralizedIDivergence extends BregmanDivergence { private static final long serialVersionUID = 5638471495692639837L; @Override public double calculateDistance(double[] value1, double[] value2) { double result = 0; double result2 = 0; for (int i = 0; i < value1.length; i++) { result += value1[i] * Math.log((value1[i]) / value2[i]); result2 += (value1[i] - value2[i]); } result = result - result2; return result; } @Override public void init(ExampleSet exampleSet) throws OperatorException { super.init(exampleSet); Tools.onlyNumericalAttributes(exampleSet, "value based similarities"); Attributes attributes = exampleSet.getAttributes(); for (Example example: exampleSet) { for (Attribute attribute: attributes) { if (example.getValue(attribute) <= 0) throw new OperatorException("The bregman divergence you've choosen is not applicable for the dataset! Proceeding with the 'Squared Euclidean distance' bregman divergence.");; } } } @Override public String toString() { return "generalized I-divergence"; } }