/* * RapidMiner * * Copyright (C) 2001-2011 by Rapid-I and the contributors * * Complete list of developers available at our web site: * * http://rapid-i.com * * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU Affero General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Affero General Public License for more details. * * You should have received a copy of the GNU Affero General Public License * along with this program. If not, see http://www.gnu.org/licenses/. */ package com.rapidminer.datatable; import java.util.HashMap; import java.util.Iterator; import java.util.Map; import com.rapidminer.operator.visualization.dependencies.NumericalMatrix; /** * This class can be used to use all pairs (entries) of a numerical matrix as data table. The data is directly * read from the numerical matrix instead of building a copy. If the matrix is symmetrical, only pairs of the lower left * triangle are returned. * Please note that the method for adding new rows is not supported by this type of data tables. * * @author Ingo Mierswa, Sebastian Land */ public class DataTablePairwiseMatrixExtractionAdapter extends AbstractDataTable { private NumericalMatrix matrix; private String[] rowNames; private Map<String,Integer> rowName2IndexMap = new HashMap<String,Integer>(); private String[] columnNames; private Map<String,Integer> columnName2IndexMap = new HashMap<String,Integer>(); private String[] tableColumnNames; private boolean showSymetrical; public DataTablePairwiseMatrixExtractionAdapter(NumericalMatrix matrix, String[] rowNames, String[] columnNames, String[] tableColumnNames, boolean showSymetrical) { super("Pairwise Correlation Table"); this.showSymetrical = showSymetrical; this.matrix = matrix; this.rowNames = rowNames; for (int i = 0; i < this.rowNames.length; i++) this.rowName2IndexMap.put(this.rowNames[i], i); this.columnNames = columnNames; for (int i = 0; i < this.columnNames.length; i++) this.columnName2IndexMap.put(this.columnNames[i], i); this.tableColumnNames = tableColumnNames; if ((this.tableColumnNames == null) || (this.tableColumnNames.length != 3)) throw new RuntimeException("Cannot create pairwise matrix extraction data table with other than 3 table column names."); } /** * Creates all pairs of one triangle of the given symetrical matrix. */ public DataTablePairwiseMatrixExtractionAdapter(NumericalMatrix matrix, String[] rowNames, String[] columnNames, String[] tableColumnNames) { this(matrix, rowNames, columnNames, tableColumnNames, true); } @Override public int getNumberOfSpecialColumns() { return 0; } @Override public boolean isSpecial(int index) { return false; } @Override public boolean isNominal(int index) { return (index <= 1); } @Override public boolean isDate(int index) { return false; } @Override public boolean isTime(int index) { return false; } @Override public boolean isDateTime(int index) { return false; } @Override public boolean isNumerical(int index) { return (index > 1); } @Override public String mapIndex(int column, int value) { if (column == 0) { return rowNames[value]; } else if (column == 1) { return columnNames[value]; } else { return "?"; } } /** Please note that this method does not map new strings but is only able to deliver strings which * where already known during construction. */ @Override public int mapString(int column, String value) { if (column == 0) { Integer result = this.rowName2IndexMap.get(value); if (result == null) return -1; else return result; } else if (column == 1) { Integer result = this.columnName2IndexMap.get(value); if (result == null) return -1; else return result; } else { return -1; } } @Override public int getNumberOfValues(int column) { if (column == 0) { return rowNames.length; } else if (column == 1) { return columnNames.length; } else { return -1; } } @Override public String getColumnName(int i) { return tableColumnNames[i]; } @Override public int getColumnIndex(String name) { for (int i = 0; i < tableColumnNames.length; i++) { if (tableColumnNames[i].equals(name)) return i; } return -1; } @Override public boolean isSupportingColumnWeights() { return false; } @Override public double getColumnWeight(int column) { return Double.NaN; } @Override public int getNumberOfColumns() { return tableColumnNames.length; } @Override public void add(DataTableRow row) { throw new RuntimeException("DataTablePairwiseCorrelationMatrixAdapter: adding new rows is not supported!"); } @Override public DataTableRow getRow(int rowIndex) { if (matrix.isSymmetrical() && showSymetrical) { int firstAttribute = 0; int secondAttribute = 1; for (int i = 0; i < rowIndex; i++) { secondAttribute++; if (secondAttribute >= matrix.getNumberOfColumns()) { firstAttribute++; secondAttribute = firstAttribute + 1; } } return new PairwiseMatrix2DataTableRowWrapper(this.matrix, firstAttribute, secondAttribute); } else { return new PairwiseMatrix2DataTableRowWrapper(this.matrix, rowIndex / matrix.getNumberOfColumns(), rowIndex % matrix.getNumberOfColumns()); } } @Override public Iterator<DataTableRow> iterator() { return new PairwiseMatrix2DataTableRowIterator(this.matrix, showSymetrical); } @Override public int getNumberOfRows() { if (matrix.isSymmetrical() && showSymetrical) return ((rowNames.length * rowNames.length) - rowNames.length) / 2; else return (matrix.getNumberOfRows() * matrix.getNumberOfColumns()); } /** Not implemented!!! Please use this class only for plotting purposes if you can ensure * that the number of columns / rows is small. */ @Override public DataTable sample(int newSize) { return this; } }