package edu.harvard.i2b2.crc.loader.util; import java.io.IOException; import edu.harvard.i2b2.common.exception.I2B2Exception; import edu.harvard.i2b2.crc.datavo.i2b2message.PasswordType; /* import edu.sdsc.grid.io.GeneralFile; import edu.sdsc.grid.io.irods.IRODSAccount; import edu.sdsc.grid.io.irods.IRODSFile; import edu.sdsc.grid.io.irods.IRODSFileSystem; import edu.sdsc.grid.io.local.LocalFile; */ public class FileTransferUtil { private final static String STORAGE_RESOURCE = "demoResc"; public String getFile(String uriLoc, PasswordType password,String defaultStorageResource, String localDestinationFolder) throws I2B2Exception { String username = uriLoc.substring(uriLoc.indexOf('/') + 2, uriLoc .indexOf('.')); String mdas = uriLoc.substring(uriLoc.indexOf('.') + 1, uriLoc .indexOf('@')); String host = uriLoc.substring(uriLoc.indexOf('@') + 1, uriLoc.indexOf( ':', 5)); int port = Integer.parseInt(uriLoc.substring( uriLoc.indexOf(':', 5) + 1, uriLoc.indexOf('/', 7))); String file = uriLoc.substring(uriLoc.indexOf('/', 7)); String localTransferedFile = null; /* IRODSAccount irodsAccount = new IRODSAccount(host, port, username, password.getValue(), "/", mdas, defaultStorageResource); GeneralFile source = null; IRODSFileSystem irodsFileSystem = null; try { irodsFileSystem = new IRODSFileSystem(irodsAccount); // URI uri = new URI( uriLoc ); // source = FileFactory.newFile( uri, password); source = new IRODSFile(irodsFileSystem, file); if (localDestinationFolder == null) { source.copyTo(new LocalFile(source.getName()), true); localTransferedFile = source.getName(); } else { source.copyTo(new LocalFile(localDestinationFolder + java.io.File.separator + source.getName()), true); localTransferedFile = localDestinationFolder + java.io.File.separator + source.getName(); } } catch (IOException ioe) { throw new I2B2Exception("FileTranferUtil.getFile failed " + ioe.getMessage(),ioe); } finally { if (irodsFileSystem != null) { try { irodsFileSystem.close(); } catch (IOException e) { // TODO Auto-generated catch block e.printStackTrace(); } } } */ return localTransferedFile; } }