/*
* This file is part of ELKI:
* Environment for Developing KDD-Applications Supported by Index-Structures
*
* Copyright (C) 2017
* ELKI Development Team
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Affero General Public License for more details.
*
* You should have received a copy of the GNU Affero General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
package de.lmu.ifi.dbs.elki.application;
import java.io.File;
import java.io.FileOutputStream;
import java.io.IOException;
import java.nio.channels.FileChannel;
import de.lmu.ifi.dbs.elki.datasource.DatabaseConnection;
import de.lmu.ifi.dbs.elki.datasource.FileBasedDatabaseConnection;
import de.lmu.ifi.dbs.elki.datasource.bundle.BundleWriter;
import de.lmu.ifi.dbs.elki.datasource.bundle.MultipleObjectsBundle;
import de.lmu.ifi.dbs.elki.logging.Logging;
import de.lmu.ifi.dbs.elki.utilities.optionhandling.OptionID;
import de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.Parameterization;
import de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.ObjectParameter;
/**
* Convert an input file to the more efficient ELKI bundle format.
*
* @author Erich Schubert
* @since 0.5.5
*/
public class ConvertToBundleApplication extends AbstractApplication {
/**
* Logging class.
*/
private static final Logging LOG = Logging.getLogger(ConvertToBundleApplication.class);
/**
* The data input step.
*/
private DatabaseConnection input;
/**
* Output filename.
*/
private File outfile;
/**
* Constructor.
*
* @param input Data source configuration
* @param outfile Output filename
*/
public ConvertToBundleApplication(DatabaseConnection input, File outfile) {
super();
this.input = input;
this.outfile = outfile;
}
@Override
public void run() {
if(LOG.isVerbose()) {
LOG.verbose("Loading data.");
}
MultipleObjectsBundle bundle = input.loadData();
if(LOG.isVerbose()) {
LOG.verbose("Serializing to output file: " + outfile.toString());
}
// TODO: make configurable?
BundleWriter writer = new BundleWriter();
try {
FileOutputStream fos = new FileOutputStream(outfile);
FileChannel channel = fos.getChannel();
writer.writeBundleStream(bundle.asStream(), channel);
channel.close();
fos.close();
}
catch(IOException e) {
LOG.exception("IO Error", e);
}
}
/**
* Parameterization class.
*
* @author Erich Schubert
*
* @apiviz.exclude
*/
public static class Parameterizer extends AbstractApplication.Parameterizer {
/**
* Option to specify the data source for the database.
*
* Key:
* <p>
* {@code -dbc}
* </p>
*/
public static final OptionID DATABASE_CONNECTION_ID = new OptionID("dbc", "Database connection class.");
/**
* The data input step.
*/
private DatabaseConnection input;
/**
* Output filename.
*/
private File outfile;
@Override
protected void makeOptions(Parameterization config) {
super.makeOptions(config);
ObjectParameter<DatabaseConnection> inputP = new ObjectParameter<>(DATABASE_CONNECTION_ID, DatabaseConnection.class, FileBasedDatabaseConnection.class);
if(config.grab(inputP)) {
input = inputP.instantiateClass(config);
}
outfile = super.getParameterOutputFile(config, "File name to serialize the bundle to.");
}
@Override
protected ConvertToBundleApplication makeInstance() {
return new ConvertToBundleApplication(input, outfile);
}
}
/**
* Run command line application.
*
* @param args Command line parameters
*/
public static void main(String[] args) {
runCLIApplication(ConvertToBundleApplication.class, args);
}
}