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package org.semanticweb.owlapi.benchmarks;
import java.io.File;
import java.io.FileOutputStream;
import java.io.IOException;
import java.io.InputStream;
import java.util.zip.GZIPInputStream;
import org.openjdk.jmh.annotations.Benchmark;
import org.openjdk.jmh.annotations.BenchmarkMode;
import org.openjdk.jmh.annotations.Level;
import org.openjdk.jmh.annotations.Mode;
import org.openjdk.jmh.annotations.Scope;
import org.openjdk.jmh.annotations.Setup;
import org.openjdk.jmh.annotations.State;
import org.openjdk.jmh.annotations.TearDown;
import org.semanticweb.owlapi.apibinding.OWLManager;
import org.semanticweb.owlapi.io.FileDocumentSource;
import org.semanticweb.owlapi.io.OWLOntologyDocumentSource;
import org.semanticweb.owlapi.model.OWLOntologyCreationException;
import org.semanticweb.owlapi.model.OWLOntologyManager;
import org.semanticweb.owlapi.model.OntologyConfigurator;
import uk.ac.manchester.cs.owl.owlapi.OWLOntologyImpl;
@SuppressWarnings("javadoc")
@State(Scope.Thread)
public class MyBenchmark {
private File uncompressedTaxonFile;
@Setup(Level.Trial)
public void setUp() throws IOException {
uncompressedTaxonFile = File.createTempFile("taxons", "ofn");
InputStream resourceAsStream = getClass().getResourceAsStream("/ncbitaxon.rdf.ofn.gz");
try (GZIPInputStream in = new GZIPInputStream(resourceAsStream);
FileOutputStream out = new FileOutputStream(uncompressedTaxonFile)) {
int n;
byte[] buf = new byte[8192];
while ((n = in.read(buf)) >= 0) {
out.write(buf, 0, n);
}
out.flush();
}
}
@TearDown(Level.Trial)
public void tearDown() {
uncompressedTaxonFile.delete();
}
@BenchmarkMode(Mode.AverageTime)
@Benchmark
public void testLoadTaxonFSS() throws OWLOntologyCreationException {
OWLOntologyManager manager = OWLManager.createOWLOntologyManager();
OWLOntologyDocumentSource ds = new FileDocumentSource(uncompressedTaxonFile);
OntologyConfigurator config = new OntologyConfigurator().setStrict(false);
OWLOntologyImpl ontology =
(OWLOntologyImpl) manager.loadOntologyFromOntologyDocument(ds, config);
manager.removeOntology(ontology);
}
}