/* * Copyright (C) 2008-2015 by Holger Arndt * * This file is part of the Universal Java Matrix Package (UJMP). * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * UJMP is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * UJMP is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with UJMP; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ package org.ujmp.parallelcolt; import java.util.HashSet; import java.util.Iterator; import java.util.Set; import org.ujmp.core.Coordinates; import org.ujmp.core.Matrix; import org.ujmp.core.doublematrix.stub.AbstractSparseDoubleMatrix2D; import org.ujmp.core.interfaces.Wrapper; import org.ujmp.core.util.CoordinateSetToLongWrapper; import org.ujmp.core.util.MathUtil; import cern.colt.matrix.tdouble.algo.DenseDoubleAlgebra; import cern.colt.matrix.tdouble.impl.DenseDoubleMatrix2D; import cern.colt.matrix.tdouble.impl.SparseDoubleMatrix2D; public class ParallelColtSparseDoubleMatrix2D extends AbstractSparseDoubleMatrix2D implements Wrapper<SparseDoubleMatrix2D> { private static final long serialVersionUID = -3223474248020842822L; public static final ParallelColtSparseDoubleMatrix2DFactory Factory = new ParallelColtSparseDoubleMatrix2DFactory(); private final SparseDoubleMatrix2D matrix; public ParallelColtSparseDoubleMatrix2D(int rows, int columns) { super(rows, columns); this.matrix = new SparseDoubleMatrix2D(rows, columns); } public ParallelColtSparseDoubleMatrix2D(SparseDoubleMatrix2D m) { super(m.rows(), m.columns()); this.matrix = m; } public ParallelColtSparseDoubleMatrix2D(Matrix source) { this(MathUtil.longToInt(source.getRowCount()), MathUtil.longToInt(source.getColumnCount())); for (long[] c : source.availableCoordinates()) { setDouble(source.getAsDouble(c), c); } if (source.getMetaData() != null) { setMetaData(source.getMetaData().clone()); } } public final void clear() { matrix.elements().clear(); } public double getDouble(long row, long column) { return matrix.getQuick((int) row, (int) column); } public double getDouble(int row, int column) { return matrix.getQuick(row, column); } public void setDouble(double value, long row, long column) { matrix.setQuick((int) row, (int) column, value); } public void setDouble(double value, int row, int column) { matrix.setQuick(row, column, value); } public SparseDoubleMatrix2D getWrappedObject() { return matrix; } public Matrix inv() { return new ParallelColtDenseDoubleMatrix2D((DenseDoubleMatrix2D) new DenseDoubleAlgebra().inverse(matrix)); } public Iterable<long[]> availableCoordinates() { return new AvailableCoordinateIterable(); } class AvailableCoordinateIterable implements Iterable<long[]> { // TODO: optimize public Iterator<long[]> iterator() { Set<Coordinates> cset = new HashSet<Coordinates>(); for (long r = getRowCount() - 1; r >= 0; r--) { for (long c = getColumnCount() - 1; c >= 0; c--) { if (getDouble(r, c) != 0.0) { cset.add(Coordinates.wrap(r, c).clone()); } } } return new CoordinateSetToLongWrapper(cset).iterator(); } } public final boolean containsCoordinates(long... coordinates) { return getAsDouble(coordinates) != 0.0; } public ParallelColtSparseDoubleMatrix2DFactory getFactory() { return Factory; } }